View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17889_low_9 (Length: 216)
Name: NF17889_low_9
Description: NF17889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17889_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 45281190 - 45281396
Alignment:
| Q |
1 |
cctgttaagtaagaatgtgcaaaatatgacgtttttaagttagaaaagtgtgtatggatgccatgagttagcctttcgtagagtgagattagggttttac |
100 |
Q |
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| T |
45281190 |
cctgttaagtaagaatgtgcaaaatatgacgtttttaagttagaaaagtgtgtatggatgccatgagttagcctt-cgtagagtgagattagggttttac |
45281288 |
T |
|
| Q |
101 |
tatccaaaactctagccgagacaactacctccttagacacctatgagtggattaggatgggacaacattggactgggatccgatgagagagaggaccttg |
200 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45281289 |
tatccaaaactctagccgagataattacctccttagacacctatgagtggattaggatgggacaacattggacttggatccgatgagagagaggaccttg |
45281388 |
T |
|
| Q |
201 |
atgatgtc |
208 |
Q |
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|||||||| |
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| T |
45281389 |
atgatgtc |
45281396 |
T |
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