View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1788_high_10 (Length: 307)
Name: NF1788_high_10
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 35688173 - 35688460
Alignment:
| Q |
14 |
gtaacgacaaaagaaagaaagtaaaagacattgttagaaagcctatcatgattaccattgcaacttgtcgaaacagatccgggataaaacttaggtttat |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35688173 |
gtaacaacaaaagaaagaaagtaaaagacattgtcagaaagcctatcatgattaccattgcaacttgtcgaaacagatccgggataaaacttaggtttat |
35688272 |
T |
|
| Q |
114 |
catttcctcttgacagggatttgacagtaagatttccattggaagcatttagtgagcctatagaaaatcaagaagaaaatcacaaagcagcatacatatn |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35688273 |
catttcctcttgacagggatttgacagtaagatttccattggaagcatttagtgagcctatagaaaatcaacaagaaaatcacaaagcagcatacatata |
35688372 |
T |
|
| Q |
214 |
nnnnnncttcaaactaagttcaagtctgcaacaatatatgcttttcttaggcagcagacgcagaaaactttaagttgatgagtataat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35688373 |
aaaaaacttcaaactaagttcaagtctgcaacaatatatgcttttcttaggcagcagacgcagaaaactttaagttgatgaatataat |
35688460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 124 - 301
Target Start/End: Original strand, 35687784 - 35687960
Alignment:
| Q |
124 |
tgacagggatttgacagtaagatttccattggaagcatttagtgagcctatagaaaatcaagaagaaaatcacaaagcagcatacatatnnnnnnncttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
35687784 |
tgacagggatttgacagtaagatttccattggaagcatttagtgagcctatagaaaatcaacaagaaaatcacaaagcagcatacatataaagaaacttc |
35687883 |
T |
|
| Q |
224 |
aaactaagttcaagtctgcaacaatatatgcttttcttaggcagcagacgcagaaaactttaagttgatgagtataat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
35687884 |
aaactaagttcaagtctgcaacaatatatgcttttcttaggcagcagatgcagaaaac-ttaagttgatgaatataat |
35687960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 35688586 - 35688681
Alignment:
| Q |
33 |
agtaaaagacattgttagaaagcctatcatgattaccattgcaacttgtcgaaacagatccgggataaaacttaggtttatcatttcctcttgaca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
35688586 |
agtaaaagacattgttagaaagcctatcatgattaccattgcaacttgtcgaaacagatccgggatgagacttaggtttatcatttcctcttgaca |
35688681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 124 - 283
Target Start/End: Complemental strand, 44971821 - 44971662
Alignment:
| Q |
124 |
tgacagggatttgacagtaagatttccattggaagcatttagtgagcctatagaaaatcaagaagaaaatcacaaagcagcatacatatnnnnnnncttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
44971821 |
tgacagggatttgacagtaagatttccattggaagcatttagtgagcctatagaaaatcaacaagaaaatcacaaagcagcatacatataaagaaacttc |
44971722 |
T |
|
| Q |
224 |
aaactaagttcaagtctgcaacaatatatgcttttcttaggcagcagacgcagaaaactt |
283 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44971721 |
aaactaagctcaagtctgcaacaatatatgcttttcttaggcagcagatgcagaaaactt |
44971662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University