View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_high_13 (Length: 267)
Name: NF1788_high_13
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 39411402 - 39411641
Alignment:
| Q |
12 |
aagaatatattacaaatttgcctttgacttattttcggagcctaatgcttatgctctaaaacatcttcgtcttgaatgttgtattgtttacaatccaacc |
111 |
Q |
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| T |
39411402 |
aagaaaatattacaaatttgcctttgacttattttcggagcctaatgcttatgctctaaaacatcttcgtcttgaatgttgtattgtttacaatccaacc |
39411501 |
T |
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| Q |
112 |
aattgtgactttattccattcaagaatttgatatcactttcactaagaaaagtagaagtggatgaaatgttcatagaaagtttgttccctgattgtctac |
211 |
Q |
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| T |
39411502 |
aattgtgactttattccattcaagaatttgatatcactttcactaagaaaagtagaagtggatgaaatgttcatagaaagtttgttccctgattgtctac |
39411601 |
T |
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| Q |
212 |
tacttgaagagctctacttagcttcttgtaatttcaaatc |
251 |
Q |
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| T |
39411602 |
tacttgaagagctctacttagcttcttgtaatttcaaatc |
39411641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 39403345 - 39403428
Alignment:
| Q |
168 |
agtggatgaaatgttcatagaaagtttgttccctgattgtctactacttgaagagctctacttagcttcttgtaatttcaaatc |
251 |
Q |
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| T |
39403345 |
agtgaatgaaatgttcatagaaagtttggtatctaattgtctactacttgaagagctctatttagattcttgtaagtttaaatc |
39403428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 47927117 - 47927346
Alignment:
| Q |
21 |
ttacaaatttgcctttgacttattttcggagcctaatgcttatgctctaaaacatcttcgtcttgaatgttgtattgtttacaatccaaccaattgtgac |
120 |
Q |
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| T |
47927117 |
ttacaaatttgcctttgacttattttcggagactactgcttctgctctaaaacatctacgtcttgaatgttgtattgtttgcaatccaaccaattgtgac |
47927216 |
T |
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| Q |
121 |
tttattccattcaagaatttgatatcactttcactaagaaaagtagaagtggatgaaatgttcatagaaagtttgttccctgattgtctactacttgaag |
220 |
Q |
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| T |
47927217 |
tttattccattcaagaatttgacatatctttcacttaatgaagtaaaagtggatgaaatgttcatagaaagtttgttatctaattgtggactgcttgaag |
47927316 |
T |
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| Q |
221 |
agctctacttagcttcttgtaatttcaaat |
250 |
Q |
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| T |
47927317 |
agctttgcttagtttattgtgagttcaaat |
47927346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 48454099 - 48453942
Alignment:
| Q |
95 |
ttgtttacaatccaaccaattgtgactttattcc-attcaagaatttgatatcactttcactaagaaaagtagaagtggatgaaatgttcatagaaagtt |
193 |
Q |
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|||||| | |||| ||||| || ||||||||||| |||||| ||||||| ||| |||||||| | | | ||||||||||||| ||||| |||||| |
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| T |
48454099 |
ttgtttgccatcccaccaactgggactttattcccattcaaaaatttgagatctctttcacttgaatttgcaaaagtggatgaaatattcatcaaaagtt |
48454000 |
T |
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| Q |
194 |
tgttccctgattgtctactacttgaagagctctacttagcttcttgtaatttcaaatc |
251 |
Q |
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|||| || ||||||||| ||||||||||| |||||| || |||| | |||||||| |
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| T |
48453999 |
tgttgtctaattgtctacggcttgaagagcttcacttagattgttgtgagttcaaatc |
48453942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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