View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1788_high_17 (Length: 231)

Name: NF1788_high_17
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1788_high_17
NF1788_high_17
[»] chr3 (1 HSPs)
chr3 (44-85)||(13322980-13323021)
[»] chr8 (3 HSPs)
chr8 (164-208)||(4524671-4524715)
chr8 (44-79)||(20008047-20008082)
chr8 (44-79)||(21682019-21682054)
[»] chr4 (2 HSPs)
chr4 (164-216)||(19742060-19742112)
chr4 (164-216)||(19797976-19798028)
[»] scaffold0139 (1 HSPs)
scaffold0139 (44-85)||(27681-27722)
[»] scaffold0326 (1 HSPs)
scaffold0326 (44-79)||(18646-18681)
[»] scaffold0193 (1 HSPs)
scaffold0193 (44-79)||(1278-1313)
[»] chr7 (1 HSPs)
chr7 (44-79)||(16072387-16072422)
[»] chr6 (1 HSPs)
chr6 (44-79)||(22796883-22796918)
[»] chr1 (1 HSPs)
chr1 (44-79)||(41307971-41308006)
[»] scaffold0309 (1 HSPs)
scaffold0309 (45-79)||(9961-9995)
[»] scaffold0924 (1 HSPs)
scaffold0924 (44-77)||(4053-4086)
[»] scaffold0102 (1 HSPs)
scaffold0102 (44-85)||(39901-39942)
[»] scaffold0001 (1 HSPs)
scaffold0001 (47-79)||(91041-91073)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 13323021 - 13322980
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccctactgaa 85  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  13323021 tcataggagtaactctcagaaacacatggtctccctcctgaa 13322980  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 4524671 - 4524715
Alignment:
Q  164 cacatgattccaacctataattgaaagtactttagtaacttctcc 208  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  4524671 cacatgattccaacctataattgaaagtacttcagtaactgctcc 4524715  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 20008047 - 20008082
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccct 79  Q
    |||||||||||||||||||||||||||| |||||||    
T  20008047 tcataggagtaactctcagaaacacatgatctccct 20008082  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 21682054 - 21682019
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccct 79  Q
    |||||||||||||||||||||||||||| |||||||    
T  21682054 tcataggagtaactctcagaaacacatgatctccct 21682019  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 19742112 - 19742060
Alignment:
Q  164 cacatgattccaacctataattgaaagtactttagtaacttctccaacattaa 216  Q
    |||||||||||||||||| |||||||||||||||| ||||  |||||||||||    
T  19742112 cacatgattccaacctatgattgaaagtactttagcaactaatccaacattaa 19742060  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 19797976 - 19798028
Alignment:
Q  164 cacatgattccaacctataattgaaagtactttagtaacttctccaacattaa 216  Q
    |||||||||||||||||| |||||||||||||||| ||||  |||||||||||    
T  19797976 cacatgattccaacctatgattgaaagtactttagcaactaatccaacattaa 19798028  T

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Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 27681 - 27722
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccctactgaa 85  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  27681 tcataggagtaactctcagaaacacatgatctccctcctgaa 27722  T

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Target: scaffold0326 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 18681 - 18646
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccct 79  Q
    |||||||||||||||||||||||||||| |||||||    
T  18681 tcataggagtaactctcagaaacacatgatctccct 18646  T

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Target: scaffold0193 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 1313 - 1278
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccct 79  Q
    |||||||||||||||||||||||||||| |||||||    
T  1313 tcataggagtaactctcagaaacacatgatctccct 1278  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 16072422 - 16072387
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccct 79  Q
    |||||||||||||||||||||||||||| |||||||    
T  16072422 tcataggagtaactctcagaaacacatgatctccct 16072387  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 22796918 - 22796883
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccct 79  Q
    |||||||||||||||||||||||||||| |||||||    
T  22796918 tcataggagtaactctcagaaacacatgatctccct 22796883  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 41307971 - 41308006
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccct 79  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41307971 tcataggagtaaccctcagaaacacatggtctccct 41308006  T

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Target: scaffold0309 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 9961 - 9995
Alignment:
Q  45 cataggagtaactctcagaaacacatggtctccct 79  Q
    ||||||||||||||||||||||||||| |||||||    
T  9961 cataggagtaactctcagaaacacatgatctccct 9995  T

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Target: scaffold0924 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 4053 - 4086
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctcc 77  Q
    |||||||||||||||||||||||||||| |||||    
T  4053 tcataggagtaactctcagaaacacatgatctcc 4086  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 39901 - 39942
Alignment:
Q  44 tcataggagtaactctcagaaacacatggtctccctactgaa 85  Q
    |||||||||||||||||||||| ||||| ||||||| |||||    
T  39901 tcataggagtaactctcagaaatacatgatctccctcctgaa 39942  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 91073 - 91041
Alignment:
Q  47 taggagtaactctcagaaacacatggtctccct 79  Q
    ||||||||||||||||||||||||| |||||||    
T  91073 taggagtaactctcagaaacacatgatctccct 91041  T

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