View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_high_2 (Length: 577)
Name: NF1788_high_2
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 9113877 - 9113787
Alignment:
| Q |
94 |
agtattgttgtttatatatatgtgacattttaagtttataaggtttctttcttggcttggtggaaagaaaaatttaagttaccacgaggtc |
184 |
Q |
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| T |
9113877 |
agtattgttgtttatatatatgtgacattttaagtttataaggtttctttcttggcttggtggaaagaaaaatttaagttaccacgaggtc |
9113787 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 518 - 566
Target Start/End: Complemental strand, 9113786 - 9113738
Alignment:
| Q |
518 |
aaatatttaattaatactatgtaatttctttttccacgttcttcatctc |
566 |
Q |
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| T |
9113786 |
aaatatttaattaatactatgtaatttctttttccacgttcttcatctc |
9113738 |
T |
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