View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_high_6 (Length: 430)
Name: NF1788_high_6
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 414
Target Start/End: Complemental strand, 13798701 - 13798296
Alignment:
| Q |
7 |
tccaagaatatgtaactattgtacgttttttattatacaatacattgcaccatttaaatattacgatctaaattacaggtttaatttgaaccgctcaatt |
106 |
Q |
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| T |
13798701 |
tccaaaaaaatgtaactgttgtaggttttttattatacaatacattgcaccatttaaatattacgatctaaattagaggtttaatttgaaccgctcaatt |
13798602 |
T |
|
| Q |
107 |
atgtttgtagactttaaactccgttcattacactcgtgtgactgttgtacacttatttgtgaatagactcataataatgaacaaatataaattccactaa |
206 |
Q |
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| T |
13798601 |
atatttgtagactttaaactccgttcattacactcatgtgactgttgtacacttatttgtgaatagactcgtaataatgaacaaatataaattccactaa |
13798502 |
T |
|
| Q |
207 |
gtatttgttacatgaatcaaaagtgttctatcaaaaaccatatttttctttaactccataacacttaacaaaccttaagatnnnnnnnnnnnnnnnnnta |
306 |
Q |
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| T |
13798501 |
atatttattacatgaatcaaaagtgttctatgaaaaaccatatttttctttaactccataactcttaacaaaccttaagataaaaataaaataaaaaaca |
13798402 |
T |
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| Q |
307 |
tgtcgatgaaaacaatttggtttaggtataaccacgtctactatatatatcatgccatctttcgtgattctctaataaattattagtctaacaaaacata |
406 |
Q |
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| T |
13798401 |
tgtcgataaaaacaatttggtttaggtataaccacgtctac--tatatatcatgccacctttcgtgattctctaataaattattagtctaacaaaacata |
13798304 |
T |
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| Q |
407 |
ttcggtcc |
414 |
Q |
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| T |
13798303 |
ttcggtcc |
13798296 |
T |
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