View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1788_low_11 (Length: 299)

Name: NF1788_low_11
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1788_low_11
NF1788_low_11
[»] chr4 (1 HSPs)
chr4 (2-299)||(26616608-26616905)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 26616905 - 26616608
Alignment:
Q  2 tcaatggaaatggcaatcacaactcagagccgaatccgcaaagaacttaccaagtagtagtaattgcaacccgagatatgggtattgctaaggatggaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616905 tcaatggaaatggcaatcacaactcagagccgaatccgcagaggacttaccaagtagtagtaattgcaacccgagatatgggtattgctaaggatggaaa 26616806  T
Q  102 attaccctggacattgcctattgatcaaaagttttttgaggatatcacaacagtgacatctgatcctgggaagaagaatgccgttgtcatgggtagaaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616805 attaccctggacattgcctattgatcaaaagttttttgaggatatcacaacagtgacatctgatcctgggaagaagaatgccgttgtcatgggtagaaaa 26616706  T
Q  202 tcatgggaggctatccctcctgagaacagacctctcaggggccgtcttaatattattctaactcgctcgggtaattttgaaattgcaactgcagataa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26616705 tcatgggaggctatccctcctgagaacagacctctcaggggccgtcttaatattattctaactcgctcgggtagttttgaaattgcaactgcagataa 26616608  T

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