View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_low_14 (Length: 244)
Name: NF1788_low_14
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 23421517 - 23421362
Alignment:
| Q |
77 |
tttaataatcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgactttacaaagctagaaattcttgcttcagcctaga |
176 |
Q |
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| T |
23421517 |
tttaataattgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgactttacaaagctagaaattcttgcttcagcctaga |
23421418 |
T |
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| Q |
177 |
catcattgatggcctgtccaccgcaattctaaacactgcattaggaggatggttat |
232 |
Q |
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| T |
23421417 |
catcattgatggcctgtccaccgcaattctaaacactgcattaggaggatggttat |
23421362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 23877614 - 23877770
Alignment:
| Q |
77 |
tttaataatcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgacttt-acaaagctagaaattcttgcttcagcctag |
175 |
Q |
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| T |
23877614 |
tttaataatcgtttagtttggcatttgcaattgaattctagcgtcacaatgccactttaacgtgaattttatgaagctagaaattcttgcttcagcctag |
23877713 |
T |
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| Q |
176 |
acatcattgatggcctgtccaccgcaattctaaacactgcattaggaggatggttat |
232 |
Q |
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| T |
23877714 |
acatcgttgatggcctgtccaccgcaattttgaacactgcattaggaggatgtttat |
23877770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 23421708 - 23421641
Alignment:
| Q |
9 |
gttgagaacttaaggtgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttgg |
76 |
Q |
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| T |
23421708 |
gttgagaacttaagttgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttgg |
23421641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 23877342 - 23877408
Alignment:
| Q |
9 |
gttgagaacttaaggtgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttg |
75 |
Q |
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| T |
23877342 |
gttgaaaatttaaggtgtaaatattaacaaataatgaaagtttcaagtgaagggaataatacggttg |
23877408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 23877530 - 23877590
Alignment:
| Q |
77 |
tttaataatcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaac |
137 |
Q |
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| T |
23877530 |
tttaataatcgtttagtttggcatttgcaattgaattctagcatcacaatgccacttcaac |
23877590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 37943277 - 37943344
Alignment:
| Q |
9 |
gttgagaacttaaggtgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttgg |
76 |
Q |
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| T |
37943277 |
gttgagaacttaaggtgtagagattaacaaataaagaaagtttcaagtgaagggaataatatggttgg |
37943344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 6276471 - 6276564
Alignment:
| Q |
84 |
atcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgac-tttacaaagctagaaattcttgcttcagcctaga |
176 |
Q |
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|||| ||||||||| |||| |||||||||||| | || || |||||||| |||||||| |||| ||||| |||| ||||||| ||||||||| |
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| T |
6276471 |
atcgattggtttggtgtttacaattgaattcttgtgttccattgccactttaacgtgacttttaggaagcttgaaaatcttgctccagcctaga |
6276564 |
T |
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