View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_low_15 (Length: 237)
Name: NF1788_low_15
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_low_15 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 24934306 - 24934087
Alignment:
| Q |
18 |
atctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaatttgatttcaattgatttag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24934306 |
atctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaattagatttcaattgatttag |
24934207 |
T |
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| Q |
118 |
taaatttacgtaggttgtgattcatatgagcaattagccataggtgaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtga |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |
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| T |
24934206 |
taaatttacataggttgtgattcatatgagcaattagccataggtgaatgaagatgcaaaggagcaaccaattactcttctaggtgtgaataattggtga |
24934107 |
T |
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| Q |
218 |
ttgtatagcagataatttga |
237 |
Q |
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| T |
24934106 |
ttttatagtagataatttga |
24934087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 18977479 - 18977259
Alignment:
| Q |
18 |
atctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaatttgatttcaattgatttag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18977479 |
atctgcaattgctttttcattcatgtatattttccacgccttgaatcccaacaatcgaagaaaaacataaaaatatacaattagatttcaattgatttag |
18977380 |
T |
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| Q |
118 |
taaatttacgtaggttgtgattcatatgagcaa-ttagccataggtgaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtg |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
18977379 |
taaatttacgtaggttgtgattcatatgagcaatttagctataggtgaatgaagatgcaaaggagcagccaattactcttctaggtgtgaataattggtg |
18977280 |
T |
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| Q |
217 |
attgtatagcagataatttga |
237 |
Q |
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| T |
18977279 |
actgtatagtagataatttga |
18977259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 9366064 - 9366283
Alignment:
| Q |
18 |
atctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaatttgatttcaattgatttag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9366064 |
atctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaattagatttcaattgatttag |
9366163 |
T |
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| Q |
118 |
taaatttacgtaggttgtgattcatatgagcaattagccataggtgaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtga |
217 |
Q |
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||||||||| |||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| || |||||| | |
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| T |
9366164 |
taaatttacataggttgtgattcaaatgagaaattagcaatgggtgaatgaagatgcaaaggagcagccaattactcttctgggtgtgaataattggtca |
9366263 |
T |
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| Q |
218 |
ttgtatagcagataatttga |
237 |
Q |
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|||||||| ||||||||||| |
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| T |
9366264 |
ttgtatagtagataatttga |
9366283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 11349109 - 11349328
Alignment:
| Q |
18 |
atctgcaattgctttttcattcatgtatattttccacgccttaaatcccaacaatcgaagaaaaacataaaaatatacaatttgatttcaattgatttag |
117 |
Q |
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||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
11349109 |
atctgcaattgctttttcaattatgtatattttccacgcctaaaatcccaacaatcaaagaaaaacataaaaatatacaaatagatttcaatcgatttag |
11349208 |
T |
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| Q |
118 |
taaatttacgtaggttgtgattcatatgagcaattagccataggtgaatgaagatgcaaaggagcagccaattactcttctaggtgtggatgattggtga |
217 |
Q |
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||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||||| || ||||||||||| || ||||| || ||||||| |
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| T |
11349209 |
taaatttacataggttgtgattcacatgagtaattagccatgggtgaatgaagatgcaaaggaacatccaattactctactgagtgtgaataattggtgg |
11349308 |
T |
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| Q |
218 |
ttgtatagcagataatttga |
237 |
Q |
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| T |
11349309 |
tgttatagtagataatttga |
11349328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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