View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1788_low_16 (Length: 234)

Name: NF1788_low_16
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1788_low_16
NF1788_low_16
[»] chr3 (6 HSPs)
chr3 (1-215)||(3353964-3354181)
chr3 (14-73)||(3458336-3458395)
chr3 (20-73)||(50345697-50345750)
chr3 (14-73)||(53888458-53888518)
chr3 (21-76)||(32721108-32721163)
chr3 (21-73)||(48444485-48444537)
[»] chr5 (3 HSPs)
chr5 (3-73)||(29022578-29022649)
chr5 (19-73)||(39428918-39428972)
chr5 (28-73)||(6373123-6373168)
[»] chr2 (7 HSPs)
chr2 (14-67)||(39181049-39181102)
chr2 (19-73)||(27987641-27987699)
chr2 (19-73)||(28074174-28074232)
chr2 (19-72)||(31584817-31584870)
chr2 (19-73)||(15803164-15803219)
chr2 (22-73)||(44954047-44954098)
chr2 (21-73)||(9087515-9087567)
[»] chr6 (4 HSPs)
chr6 (19-73)||(4089447-4089501)
chr6 (19-52)||(33676999-33677032)
chr6 (19-73)||(4464922-4464976)
chr6 (24-72)||(5613475-5613523)
[»] chr7 (8 HSPs)
chr7 (22-73)||(30301974-30302025)
chr7 (21-61)||(31180028-31180068)
chr7 (14-71)||(7391461-7391518)
chr7 (14-57)||(23772606-23772649)
chr7 (14-73)||(33187896-33187955)
chr7 (22-52)||(38987375-38987405)
chr7 (14-73)||(1277909-1277969)
chr7 (26-73)||(44487367-44487415)
[»] chr4 (10 HSPs)
chr4 (21-72)||(21443001-21443052)
chr4 (14-73)||(47063664-47063723)
chr4 (19-57)||(9119852-9119890)
chr4 (20-52)||(28879979-28880011)
chr4 (22-70)||(29576188-29576236)
chr4 (22-73)||(46669995-46670047)
chr4 (21-60)||(4442043-4442082)
chr4 (21-52)||(52430627-52430658)
chr4 (22-62)||(23902492-23902532)
chr4 (22-73)||(42650615-42650667)
[»] scaffold0471 (1 HSPs)
scaffold0471 (18-71)||(4698-4751)
[»] chr8 (6 HSPs)
chr8 (18-71)||(36106580-36106633)
chr8 (19-73)||(41455233-41455287)
chr8 (21-73)||(27085327-27085379)
chr8 (22-73)||(5911476-5911527)
chr8 (14-73)||(13406399-13406458)
chr8 (19-57)||(1839887-1839925)
[»] chr1 (6 HSPs)
chr1 (27-70)||(6537943-6537986)
chr1 (22-73)||(34552137-34552188)
chr1 (14-48)||(35619580-35619614)
chr1 (14-57)||(17556638-17556681)
chr1 (19-73)||(24436982-24437037)
chr1 (19-57)||(12625890-12625928)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3353964 - 3354181
Alignment:
Q  1 aaaatagagaacatgggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattgcataaacatagtcattggatcaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3353964 aaaatagagaacatgggaggcttatttttcttcaaaatataaaactctcctcgtttggggaattaaaaaattgcataaacatagtcattggatcaatcaa 3354063  T
Q  101 aattggcagataagatttgaggtaattaaataaacttacacctggtgtgaacga---ctgactcagatctatgatactaattgtactctcagattctaat 197  Q
    ||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||   ||||||||||||||||||||||||||||||||| ||||| |||    
T  3354064 aattgacagataagatttgatgtaattaaatagacttacatctggtgtgaacgaatcctgactcagatctatgatactaattgtactctcggattccaat 3354163  T
Q  198 taatacaaatcatatctt 215  Q
    ||||||||||||||||||    
T  3354164 taatacaaatcatatctt 3354181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 3458395 - 3458336
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||| |||||||||||||||||||||||||  |||||||||| |||| ||||||||||    
T  3458395 tgggagacttatttttcttcaaaatataaaaccgtcctcgtttggggaactaaaaaattg 3458336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 50345750 - 50345697
Alignment:
Q  20 gcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||||||||||||||||||||||| ||||||||||| |||| |||| |||||    
T  50345750 gcttatttttcttcaaaatataaaacactcctcgtttggggaactaaagaattg 50345697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 53888458 - 53888518
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgttt-gaggaattaaaaaattg 73  Q
    |||| ||||||||||||||||||||||||||| ||||| |||| | |||| ||||||||||    
T  53888458 tggggggcttatttttcttcaaaatataaaaccctccttgtttgggggaactaaaaaattg 53888518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 32721163 - 32721108
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattgcat 76  Q
    ||||||||||||||||||||||||||||| || |||| | || | |||||||||||    
T  32721163 cttatttttcttcaaaatataaaactctcttcatttgggaaactcaaaaattgcat 32721108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 48444485 - 48444537
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||||||||||||||||||||||  ||||| |||| |||  ||||||||||    
T  48444485 cttatttttcttcaaaatataaaaccttcctcatttggggatctaaaaaattg 48444537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 29022578 - 29022649
Alignment:
Q  3 aatagagaacat-gggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  29022578 aatagagaacattgggaggattatttttcttcaaaatataaaactctcctcatttaaggaactaaaaaattg 29022649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 39428918 - 39428972
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    ||||||||| ||||||||||||||||   ||||| ||||||||| ||||||||||    
T  39428918 ggcttatttatcttcaaaatataaaatcttcctcatttgaggaactaaaaaattg 39428972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 6373123 - 6373168
Alignment:
Q  28 ttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||||||||||||||| |||||| |||| |||| ||||||||||    
T  6373123 ttcttcaaaatataaaaccctcctcatttggggaactaaaaaattg 6373168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 39181049 - 39181102
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaa 67  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  39181049 tgggaggcttatttttcttcaaaatataaaactctcctcatttgaggaactaaa 39181102  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 27987641 - 27987699
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactct----cctcgtttgaggaattaaaaaattg 73  Q
    ||||||||||||||||||||||||||||||    |||||||||||||| ||||||||||    
T  27987641 ggcttatttttcttcaaaatataaaactcttctccctcgtttgaggaactaaaaaattg 27987699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 28074174 - 28074232
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactct----cctcgtttgaggaattaaaaaattg 73  Q
    ||||||||||||||||||||||||||||||    |||||||||||||| ||||||||||    
T  28074174 ggcttatttttcttcaaaatataaaactcttctccctcgtttgaggaactaaaaaattg 28074232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 31584870 - 31584817
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaatt 72  Q
    ||||||||||||||||||||||||||| |||||| |||| |||| |||||||||    
T  31584870 ggcttatttttcttcaaaatataaaaccctcctcatttggggaactaaaaaatt 31584817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 15803164 - 15803219
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctc-gtttgaggaattaaaaaattg 73  Q
    ||||||||||||||||||||||||||| |||||| ||| | |||| ||||||||||    
T  15803164 ggcttatttttcttcaaaatataaaaccctcctcagttgggggaactaaaaaattg 15803219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 44954098 - 44954047
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||||||||||||||||||||| |||||| ||| | ||| ||||||||||    
T  44954098 ttatttttcttcaaaatataaaaccctcctcattttaagaactaaaaaattg 44954047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 9087567 - 9087515
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||| |||||||||||||||||||| |||||| |||| |||| | ||||||||    
T  9087567 cttaattttcttcaaaatataaaaccctcctcatttggggaactgaaaaattg 9087515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4089501 - 4089447
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  4089501 ggcttatttttcttcaaaatataaaactctcctcatttgaggaactaagaaattg 4089447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 33676999 - 33677032
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctc 52  Q
    ||||||||||||||||||||||||||||||||||    
T  33676999 ggcttatttttcttcaaaatataaaactctcctc 33677032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 4464922 - 4464976
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    ||||||||||||||||||||||| |||  ||||| |||| |||| ||||||||||    
T  4464922 ggcttatttttcttcaaaatatacaaccttcctcatttggggaactaaaaaattg 4464976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 5613475 - 5613523
Alignment:
Q  24 atttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaatt 72  Q
    |||||||||||||||||||||| |||||| |||| ||||  ||||||||    
T  5613475 atttttcttcaaaatataaaaccctcctcatttggggaacaaaaaaatt 5613523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 30302025 - 30301974
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    ||||||||||||||||||||||||||||||| |||||| || ||||||||||    
T  30302025 ttatttttcttcaaaatataaaactctcctcatttgagaaactaaaaaattg 30301974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 31180068 - 31180028
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctcgtttgagga 61  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  31180068 cttatttttcttcaaaatataaaactctcctcatttgagga 31180028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 7391518 - 7391461
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaat 71  Q
    |||| ||||||||||||||||||||||||||| |||||  |||| |||| ||||||||    
T  7391518 tggggggcttatttttcttcaaaatataaaaccctccttatttggggaactaaaaaat 7391461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 23772649 - 23772606
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttg 57  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||    
T  23772649 tgggagacttatttttcttcaaaatataaaaatctcctcatttg 23772606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 33187955 - 33187896
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||| ||||| ||||||||||||||||||||   ||||| ||||||||| ||||||||||    
T  33187955 tggggggcttgtttttcttcaaaatataaaatcatcctcatttgaggaactaaaaaattg 33187896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 38987375 - 38987405
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctc 52  Q
    |||||||||||||||||||||||||||||||    
T  38987375 ttatttttcttcaaaatataaaactctcctc 38987405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 1277909 - 1277969
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctc-gtttgaggaattaaaaaattg 73  Q
    |||| |||||||||||||||||||||||||||  |||||  |||| |||| ||||||||||    
T  1277909 tggggggcttatttttcttcaaaatataaaaccatcctcattttggggaactaaaaaattg 1277969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 44487415 - 44487367
Alignment:
Q  26 ttttcttcaaaatataaaactctcctcgttt-gaggaattaaaaaattg 73  Q
    ||||||||||||||||||| ||||||| ||| |||||| ||||||||||    
T  44487415 ttttcttcaaaatataaaattctcctcatttagaggaactaaaaaattg 44487367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 21443001 - 21443052
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaatt 72  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||||||    
T  21443001 cttatttttcttcaaaatataaaaccctcctcatttgaggaactaaaaaatt 21443052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 47063664 - 47063723
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||| |||||||||||||| |||||||||||| |||||| |||| |||| ||||||||||    
T  47063664 tggggggcttatttttctttaaaatataaaaccctcctcatttggggaactaaaaaattg 47063723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 9119890 - 9119852
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttg 57  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  9119890 ggcttatttttcttcaaaatataaaactctcctcatttg 9119852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 28879979 - 28880011
Alignment:
Q  20 gcttatttttcttcaaaatataaaactctcctc 52  Q
    |||||||||||||||||||||||||||||||||    
T  28879979 gcttatttttcttcaaaatataaaactctcctc 28880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 29576236 - 29576188
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaa 70  Q
    |||||||||||||||||||||||| |||||| |||| |||| |||||||    
T  29576236 ttatttttcttcaaaatataaaacgctcctcatttggggaactaaaaaa 29576188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 46670047 - 46669995
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgtttga-ggaattaaaaaattg 73  Q
    |||||||||||||||||||||||| |||||| ||||| |||| ||||||||||    
T  46670047 ttatttttcttcaaaatataaaaccctcctcatttgagggaactaaaaaattg 46669995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 4442082 - 4442043
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctcgtttgagg 60  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  4442082 cttatttttcttcaaaatataaaaccctcctcatttgagg 4442043  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 52430658 - 52430627
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctc 52  Q
    ||||||||||||||||||||||||||||||||    
T  52430658 cttatttttcttcaaaatataaaactctcctc 52430627  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 23902532 - 23902492
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgtttgaggaa 62  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  23902532 ttatttttcttcaaaatatgaaaccctcctcatttgaggaa 23902492  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 42650615 - 42650667
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgttt-gaggaattaaaaaattg 73  Q
    |||||||||||||||||||||||| |||||| ||| | |||| ||||||||||    
T  42650615 ttatttttcttcaaaatataaaaccctcctcatttgggggaactaaaaaattg 42650667  T

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Target: scaffold0471 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 4751 - 4698
Alignment:
Q  18 aggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaat 71  Q
    ||||||||||||||||||||||||||||||||||||| |  |||| ||||||||    
T  4751 aggcttatttttcttcaaaatataaaactctcctcgtatagggaactaaaaaat 4698  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 36106633 - 36106580
Alignment:
Q  18 aggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaat 71  Q
    ||||||||||||||||||||||||||||||||||||| |  |||| ||||||||    
T  36106633 aggcttatttttcttcaaaatataaaactctcctcgtatagggaactaaaaaat 36106580  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41455233 - 41455287
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    ||||||||||||||||||||||||||| |||||| |||| | || ||||||||||    
T  41455233 ggcttatttttcttcaaaatataaaaccctcctcatttgggaaactaaaaaattg 41455287  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 27085327 - 27085379
Alignment:
Q  21 cttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||||||||||| ||||||||||||||| ||| |||| |||| ||||||||||    
T  27085327 cttatttttctttaaaatataaaactcttctcatttggggaactaaaaaattg 27085379  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 5911527 - 5911476
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    ||||||||||| |||||||||||| |||||| |||| |||| ||||||||||    
T  5911527 ttatttttctttaaaatataaaaccctcctcatttggggaactaaaaaattg 5911476  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 13406399 - 13406458
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    |||| ||||||| |||||||||||||||||||  ||||| |||| |||| ||||||||||    
T  13406399 tggggggcttatatttcttcaaaatataaaacaatcctcatttggggaactaaaaaattg 13406458  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 1839925 - 1839887
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttg 57  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  1839925 ggcttatttttcttcaaaatataaaaccctcctcatttg 1839887  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 6537943 - 6537986
Alignment:
Q  27 tttcttcaaaatataaaactctcctcgtttgaggaattaaaaaa 70  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  6537943 tttcttcaaaatataaaactctcctcgtttggagaattaaaaaa 6537986  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 34552188 - 34552137
Alignment:
Q  22 ttatttttcttcaaaatataaaactctcctcgtttgaggaattaaaaaattg 73  Q
    ||||||||||| |||||||||||| |||||| ||||||||| ||||||||||    
T  34552188 ttatttttctttaaaatataaaaccctcctcatttgaggaactaaaaaattg 34552137  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 35619614 - 35619580
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactct 48  Q
    |||||||||||||||||||||||||||||||||||    
T  35619614 tgggaggcttatttttcttcaaaatataaaactct 35619580  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 17556638 - 17556681
Alignment:
Q  14 tgggaggcttatttttcttcaaaatataaaactctcctcgtttg 57  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  17556638 tggggggcttatttttcttcaaaatataaaaccctcctcatttg 17556681  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 24437037 - 24436982
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgttt-gaggaattaaaaaattg 73  Q
    ||||||||||||||||||||||||||| |||||| ||| | ||| |||||||||||    
T  24437037 ggcttatttttcttcaaaatataaaaccctcctcatttgggggagttaaaaaattg 24436982  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 12625928 - 12625890
Alignment:
Q  19 ggcttatttttcttcaaaatataaaactctcctcgtttg 57  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  12625928 ggcttatttttcttcaaaatataaaaatctcctcatttg 12625890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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