View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_low_3 (Length: 543)
Name: NF1788_low_3
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_low_3 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 374390 - 374905
Alignment:
| Q |
19 |
gacgggacatcccttcttggccaattggatgttgcttttctcgcagtttatgcatttgggatgtacttttctggacattttggtgacaggtgtaatttga |
118 |
Q |
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| T |
374390 |
gacgggacatcccttcttggccaattggatgttgcttttctcgcagtttatgcatttgggatgtacttttctggacattttggtgacaggtgtaatttga |
374489 |
T |
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| Q |
119 |
ggannnnnnnaactattgggatggttggaactggtgttttcacttcactctttggtgtagggttttggggaaacaatcacaatttctactattatttagt |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374490 |
ggatttttttaactattgggatggttggaactggtgttttcacttcactctttggtgtagggttttggggaaacaatcacaatttctactattatttagt |
374589 |
T |
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| Q |
219 |
cattcaaatgatttctggtttgtttcaatccactggatggccatccgtagttgcggttttgggtaactggtttggaaagcggaagagagggttgatcatg |
318 |
Q |
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| T |
374590 |
cattcaaatgattgctggtttgtttcaatccactggatggccatccgtagttgcggttttgggtaactggtttggaaagcggaagagagggttgatcatg |
374689 |
T |
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| Q |
319 |
ggaatttggaatgctcatacttctgtcgggaacattgctggttctttgattgcttctgctatgttgggatatggatggggatggtctttcgttgtgcccg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
374690 |
ggaatttggaatgctcatacttctgtcgggaacattgctggttctttgattgcttctgctatgttgggatatggatggggatggtcttttgttgtgcctg |
374789 |
T |
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| Q |
419 |
gattaataatgtctttccttggtttggtggttttcctaatattgcctgtctcacctgagtctgccggagtcgaagaagatgattatagttgtcctaagaa |
518 |
Q |
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| T |
374790 |
gattaataatgtctttccttggtttggtggttttcctaatattgcctgtctcacctgagtctgccggagttgaagaagatgattatagttgtcctaagaa |
374889 |
T |
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| Q |
519 |
aagcggagatgatgtc |
534 |
Q |
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| T |
374890 |
aagcggagatgatgtc |
374905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 41288123 - 41288263
Alignment:
| Q |
223 |
caaatgatttctggtttgtttcaatccactggatggccatccgtagttgcggttttgggtaactggtttggaaagcggaagagagggttgatcatgggaa |
322 |
Q |
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||||||||| |||| ||||||||| | || || ||||| || || || || ||| | |||||||||||||| ||| |||||||||| ||||| ||||| | |
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| T |
41288123 |
caaatgattgctgggttgtttcaagcgacgggttggccgtcggtcgtcgccgttatcggtaactggtttgggaagaggaagagaggtttgataatgggta |
41288222 |
T |
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| Q |
323 |
tttggaatgctcatacttctgtcgggaacattgctggttct |
363 |
Q |
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|||||||||| ||||||||||| ||||| ||| ||||||| |
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| T |
41288223 |
tttggaatgcacatacttctgttgggaatattagtggttct |
41288263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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