View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_low_4 (Length: 525)
Name: NF1788_low_4
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Complemental strand, 1347583 - 1347071
Alignment:
| Q |
7 |
gtgagatgaatatttcctagatgtatacttggttttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctcc |
106 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347583 |
gtgatatgaatatttcctagatatatacttggtgttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctcc |
1347484 |
T |
|
| Q |
107 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
1347483 |
ttatacaaatcaatggtccaacaattctagggtacacttaataactacgcgatatatgctttgcttagcatttttcgtaaccacgttgcttgaatagaac |
1347384 |
T |
|
| Q |
207 |
aatttgtggctg------------tgtccatatttcttgcattcatgacactgctttattttgcacagagccattacctcttgttccattgcttgagtta |
294 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1347383 |
aatttgttgctgatatatatattatgtccatatttcttgcattcatgacactgctttattttgcacagagccattacctctagttccattgcttgagtta |
1347284 |
T |
|
| Q |
295 |
gttctacctctgaactttttccctctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgatt |
394 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347283 |
gttctacctctgaacttttgccctctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgatt |
1347184 |
T |
|
| Q |
395 |
gattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgcttgcatatcattcaaggtctttgagataagatctttttgactctt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1347183 |
gattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgcttgcaaatcattcaaggtctttgagataagatctttttgactctt |
1347084 |
T |
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| Q |
495 |
gaattgcttctat |
507 |
Q |
| |
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||||||||||||| |
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| T |
1347083 |
gaattgcttctat |
1347071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 331 - 443
Target Start/End: Original strand, 8675805 - 8675916
Alignment:
| Q |
331 |
ggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcattt |
430 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||| |||||||||||| || || ||| | ||||||||||||||| |||||| ||||| ||||| |
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| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcagatttgttggagctgtaaatgtttgttcgattgtgtcacttga-cctttcactcattaacattt |
8675903 |
T |
|
| Q |
431 |
catgtgactccaa |
443 |
Q |
| |
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|||| |||||||| |
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| T |
8675904 |
catgcgactccaa |
8675916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 8675681 - 8675798
Alignment:
| Q |
73 |
atttgatggtttgaaaagtataggttttgtctccttatacaaatcaat-ggtccaacaattctagggtgcacttaataactacgcgatatatgcattgct |
171 |
Q |
| |
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|||||| |||||||| | || ||| || ||||||||||||||||||| |||| |||||||||||||||||| ||||||| || ||||||| ||||| |
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| T |
8675681 |
atttgacggtttgaacaatacaggcttggtctccttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgcaatatatgttttgct |
8675780 |
T |
|
| Q |
172 |
tagcatttttcgtaacca |
189 |
Q |
| |
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||||||||| ||||||| |
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| T |
8675781 |
tagcattttctgtaacca |
8675798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 9619569 - 9619623
Alignment:
| Q |
327 |
ttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagctt |
381 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| |
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| T |
9619569 |
ttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagctt |
9619623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 502
Target Start/End: Original strand, 19807579 - 19807693
Alignment:
| Q |
386 |
tgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgcttgcatatcattcaaggtctttgagataagatcttt |
485 |
Q |
| |
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|||||||| |||||||||||||||| |||| | ||| ||||||||||||||| ||||| || ||||| ||||||| ||||| || | | ||||| || |
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| T |
19807579 |
tgcttgatcgattgtgtcacttgact-tttcacttatttgcatttcatgtgactgcaagggtgattgcaaatcattctaggtcgctgtgttcagatc-tt |
19807676 |
T |
|
| Q |
486 |
ttgactcttgaattgct |
502 |
Q |
| |
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||||||||| ||||||| |
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| T |
19807677 |
ttgactcttcaattgct |
19807693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 9619327 - 9619439
Alignment:
| Q |
107 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
206 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||||||| || || |||| ||||||||||||| ||||||| ||| |||| || || |
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| T |
9619327 |
ttatacaaataaatggtcttctaattatagggtgcacttaataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaat |
9619426 |
T |
|
| Q |
207 |
aatttgtggctgt |
219 |
Q |
| |
|
||||||||||||| |
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|
| T |
9619427 |
aatttgtggctgt |
9619439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 15785105 - 15785176
Alignment:
| Q |
82 |
tttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataacta |
153 |
Q |
| |
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|||||| | ||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||| ||||||| |
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| T |
15785105 |
tttgaacaatataggtttggtctccttataccaattaatggtccaccaattctagggtgcacttgataacta |
15785176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 440
Target Start/End: Complemental strand, 32241253 - 32241112
Alignment:
| Q |
297 |
tctacctctgaactttttccctctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcag-ttttgttggagcttgaagtgcttgattg |
395 |
Q |
| |
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||||||||| || |||| |||||||| ||| | |||||||| |||||||||||||||||| || |||||| ||||| ||||||| || || ||| | | |
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| T |
32241253 |
tctacctctaaagttttgccctctttggtt--gaggtctaccatcctttgcacaaatccctcatctgtcagattttgaaggagctttaaatgtttggtcg |
32241156 |
T |
|
| Q |
396 |
attgtgtcacttgaccctttctttcattcgcatttcatgtgactc |
440 |
Q |
| |
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||| ||||||| || |||||| |||||| ||||||||||||||| |
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|
| T |
32241155 |
attatgtcactcga-cctttcactcattcacatttcatgtgactc |
32241112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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