View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1788_low_5 (Length: 493)
Name: NF1788_low_5
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 2423070 - 2423331
Alignment:
| Q |
17 |
agatatgggatgggaaggcacttatcttgcgactaaagcaaaaaatagtgggctgttggcactacacaaaacattaatccagaaaacaatactactaatt |
116 |
Q |
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| T |
2423070 |
agatatgggatgggaaggcacttatcttgcgactaaagcaaaaaatagtgggctatttgcactacacaaaacattaatccagaaaacaatactactaatt |
2423169 |
T |
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| Q |
117 |
aaaatggtggctttatacaatcctaactatgttcgcaagtagcacttttgcgtgctcttttatcatattatatcaagcaaccatttacgtaattaatagt |
216 |
Q |
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| T |
2423170 |
aaaatggtggctttatacaatcctaactatgttcgcaagtagcacttttgcgtgctctttgataatattatatcaagcaaccatttacgtaattaatagt |
2423269 |
T |
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| Q |
217 |
ttgtcttttctttatacctttcaatcaaccatgcatgcttttctttacttcacaaacttcta |
278 |
Q |
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| T |
2423270 |
ttgtcttttctttatacctttcaatcaaccatgcatgcttttctttacttcacaaacttcta |
2423331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 275 - 481
Target Start/End: Original strand, 2423354 - 2423560
Alignment:
| Q |
275 |
tctactaacacatacacagtaccccaactcaagttgacatgaatggtgggaaggatttcgatttaagatagtaattgtgtgatgtgatgtagtttttgat |
374 |
Q |
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| T |
2423354 |
tctactaacacatacacagtaccccaactcaagttgacatgaatggtgggaaggatttcgatttaagatagtaattgtgtgatgtgatgtagtttttgat |
2423453 |
T |
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| Q |
375 |
aggttcaacctcaaatcaatgataaaaatcatttgaaaataattcaaggtctacacttttatgaaacaacattaacttttgatgtcatacaatgacttga |
474 |
Q |
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| T |
2423454 |
aggttcaacctcaaatcaatgataaaaatcatttgaaaataattcaaggtttacacttttatgaaacaacattaacttttgatgtcatacaatgacttga |
2423553 |
T |
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| Q |
475 |
tgatgtc |
481 |
Q |
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| T |
2423554 |
tgatgtc |
2423560 |
T |
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