View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1788_low_7 (Length: 424)

Name: NF1788_low_7
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1788_low_7
NF1788_low_7
[»] chr1 (3 HSPs)
chr1 (94-363)||(26310399-26310667)
chr1 (360-413)||(26310894-26310947)
chr1 (94-156)||(47833904-47833968)
[»] chr8 (2 HSPs)
chr8 (159-291)||(21347259-21347389)
chr8 (94-148)||(15051618-15051672)
[»] chr3 (2 HSPs)
chr3 (94-154)||(7909527-7909587)
chr3 (94-156)||(53837504-53837568)
[»] chr2 (3 HSPs)
chr2 (94-156)||(27648448-27648510)
chr2 (98-156)||(44686138-44686198)
chr2 (162-238)||(14433483-14433557)
[»] chr6 (2 HSPs)
chr6 (97-150)||(353107-353162)
chr6 (101-148)||(12273694-12273741)
[»] chr5 (3 HSPs)
chr5 (95-156)||(33827592-33827655)
chr5 (159-238)||(26702900-26702978)
chr5 (159-238)||(26972633-26972711)
[»] chr4 (2 HSPs)
chr4 (159-209)||(44643608-44643657)
chr4 (94-143)||(54572968-54573019)
[»] chr7 (1 HSPs)
chr7 (158-238)||(22301035-22301114)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 94 - 363
Target Start/End: Original strand, 26310399 - 26310667
Alignment:
Q  94 cttatcgattattgactgaggcgtgcgatgcactgggcttaaaagtattttgccacctcggattattgatttgtgaagattttgatggatcattgtcaga 193  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| || ||||||||||||||| |||||||||||| |  ||||| |    
T  26310399 cttatcgattattgactgaggcttgcgatgcactaggcttaagagtattttgccacc-cgaattattgatttgtgacgattttgatggagctgtgtca-a 26310496  T
Q  194 caaccaaattcgataacttccttatgcttgattttactttattataatgat-tttatttgttaccgtaattctcttcaatttgtttttccatgtctaaaa 292  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  26310497 caaccaaattcgataagtttcttgtgcttgattttactttattataatgatatttatttgttaccgtaattctcttcaatttgtctttccatgtctaaaa 26310596  T
Q  293 taagaaaaatgattcata--gtggttcttgtatcaccactatataacaaggatgtgatcaaatatccggttgg 363  Q
    ||||||||||||||||||  ||||||| ||||||||||||| |||||||||  ||||||||||||||||||||    
T  26310597 taagaaaaatgattcatagtgtggttcatgtatcaccactagataacaagg--gtgatcaaatatccggttgg 26310667  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 26310894 - 26310947
Alignment:
Q  360 ttggatattggatatgatgtgtttgcttacgggtcttgtctcgttgaccttcat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26310894 ttggatattggatatgatgtgtttgcttacgggtcttgtctcgttgaccttcat 26310947  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 47833968 - 47833904
Alignment:
Q  94 cttatcgattattgactgaggcgtgc--gatgcactgggcttaaaagtattttgccacctcggat 156  Q
    |||||||||||||||||||||| |||  || ||| ||||||||| ||||||| |||||| |||||    
T  47833968 cttatcgattattgactgaggcatgcatgaagcattgggcttaagagtatttcgccaccccggat 47833904  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 21347259 - 21347389
Alignment:
Q  159 ttgatttgtgaagattttgatggatcattgtcagacaaccaaattcgataacttccttatgcttgattttactttattataatgat-tttatttgttacc 257  Q
    ||||||||||||||||||||| || |  |||| |||||||||||| ||||| || ||| || |||||||||||||||||  || || |||||||||||||    
T  21347259 ttgatttgtgaagattttgatagagctgtgtc-gacaaccaaatttgataaatttcttgtgtttgattttactttatta--atcatatttatttgttacc 21347355  T
Q  258 gtaattctcttcaatttgtttttccatgtctaaa 291  Q
     ||||| |||| ||||||||||||||||||||||    
T  21347356 ataattatctttaatttgtttttccatgtctaaa 21347389  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 15051672 - 15051618
Alignment:
Q  94 cttatcgattattgactgaggcgtgcgatgcactgggcttaaaagtattttgcca 148  Q
    |||||||||||||||||||| ||||| ||||| |||| |||| ||||||| ||||    
T  15051672 cttatcgattattgactgagacgtgcaatgcattgggtttaagagtatttcgcca 15051618  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 7909527 - 7909587
Alignment:
Q  94 cttatcgattattgactgaggcgtgcgatgcactgggcttaaaagtattttgccacctcgg 154  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  7909527 cttattgattattgactgaggcgtgcaatgcattgggcttaagagtattttgccacttcgg 7909587  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 53837504 - 53837568
Alignment:
Q  94 cttatcgattattgactgaggcgtgc--gatgcactgggcttaaaagtattttgccacctcggat 156  Q
    ||||||||||||||||||||||||||  || | | ||||||||| ||||||| ||||||||||||    
T  53837504 cttatcgattattgactgaggcgtgcatgaagtattgggcttaagagtatttcgccacctcggat 53837568  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 27648510 - 27648448
Alignment:
Q  94 cttatcgattattgactgaggcgtgcgatgcactgggcttaaaagtattttgccacctcggat 156  Q
    ||||||||||||||| |||||||||  ||||| ||| ||||||||||||| ||||||| ||||    
T  27648510 cttatcgattattgattgaggcgtggaatgcattggacttaaaagtatttcgccaccttggat 27648448  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 44686138 - 44686198
Alignment:
Q  98 tcgattattgactgaggcgtgcga--tgcactgggcttaaaagtattttgccacctcggat 156  Q
    |||||||||||||||||| ||| |  |||||||||||||| ||||||| ||||||||||||    
T  44686138 tcgattattgactgaggcatgcaaaatgcactgggcttaagagtatttcgccacctcggat 44686198  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 14433557 - 14433483
Alignment:
Q  162 atttgtgaagattttgatggatcattgtcagacaaccaaattcgataacttccttatgcttgattttactttattat 238  Q
    ||||||||||||||||||||| |  |||| |||||  ||||||||||| ||||||||  || |||||||||||||||    
T  14433557 atttgtgaagattttgatggagccatgtc-gacaattaaattcgataagttccttat-ttttattttactttattat 14433483  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 353162 - 353107
Alignment:
Q  97 atcgattattgactgaggcgtg--cgatgcactgggcttaaaagtattttgccacc 150  Q
    ||||||||||||||||||||||  ||| ||||||||||||| ||||||| ||||||    
T  353162 atcgattattgactgaggcgtgcacgaagcactgggcttaagagtatttcgccacc 353107  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 12273741 - 12273694
Alignment:
Q  101 attattgactgaggcgtgcgatgcactgggcttaaaagtattttgcca 148  Q
    |||||||| |||||||||| |||||| |||||||| ||||||||||||    
T  12273741 attattgattgaggcgtgcaatgcaccgggcttaagagtattttgcca 12273694  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 33827655 - 33827592
Alignment:
Q  95 ttatcgattattgactgaggcgtgc--gatgcactgggcttaaaagtattttgccacctcggat 156  Q
    |||||| | ||||||||||||||||  || ||||||||||||| |||||||||||||| |||||    
T  33827655 ttatcggtcattgactgaggcgtgcacgaagcactgggcttaagagtattttgccaccccggat 33827592  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 26702978 - 26702900
Alignment:
Q  159 ttgatttgtgaagattttgatggatcattgtcagacaaccaaattcgataacttccttatgcttgattttactttattat 238  Q
    ||||||||||||| ||||||||||    |||| ||| |||||||||||||| || ||| ||||| |||||||||||||||    
T  26702978 ttgatttgtgaaggttttgatggagttatgtc-gacgaccaaattcgataaatttcttgtgcttcattttactttattat 26702900  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 26972711 - 26972633
Alignment:
Q  159 ttgatttgtgaagattttgatggatcattgtcagacaaccaaattcgataacttccttatgcttgattttactttattat 238  Q
    ||||||||||||| ||||||||||    |||| ||| |||||||||||||| || ||| ||||| |||||||||||||||    
T  26972711 ttgatttgtgaaggttttgatggagttatgtc-gacgaccaaattcgataaatttcttgtgcttcattttactttattat 26972633  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 44643608 - 44643657
Alignment:
Q  159 ttgatttgtgaagattttgatggatcattgtcagacaaccaaattcgataa 209  Q
    |||||||||||||||||||||||| | ||||| | ||||||||||||||||    
T  44643608 ttgatttgtgaagattttgatggagctttgtc-ggcaaccaaattcgataa 44643657  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 54573019 - 54572968
Alignment:
Q  94 cttatcgattattgactgaggcgtg--cgatgcactgggcttaaaagtattt 143  Q
    |||||||||||||||||||||||||  ||| ||||||| ||||| |||||||    
T  54573019 cttatcgattattgactgaggcgtgcacgaagcactggacttaagagtattt 54572968  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 22301114 - 22301035
Alignment:
Q  158 attgatttgtgaagattttgatgga-tcattgtcagacaaccaaattcgataacttccttatgcttgattttactttattat 238  Q
    |||||||||||||| |||||||||| |||| ||| |||||||||||||||||| |||||| | |||  ||| ||||||||||    
T  22301114 attgatttgtgaaggttttgatggaatcat-gtc-gacaaccaaattcgataagttccttttactttgtttcactttattat 22301035  T

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