View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1788_low_9 (Length: 340)
Name: NF1788_low_9
Description: NF1788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1788_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 30845976 - 30846288
Alignment:
| Q |
11 |
cagagaagacaaataagaaaattcacataacaacttggtcatattacggaagaagaagaaaacaccaaaaaaggaaatcagtaagaacattgctgcaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30845976 |
cagagaagacaaataagaaaattcacataacaacttggtcatattacggaagaagaagaaaacaccaaaaaaggaaatcagtaagaacatagctgcaatt |
30846075 |
T |
|
| Q |
111 |
cttcgttgagcacatgtgggataaaatgaaatttttaagaaactttcttaatgtcagatagctagttataacatcgtaaattagtaaagctctgaaattc |
210 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30846076 |
ctttgttgaacacatgtgggataaaatgaaatttttaagaaactttcttaatgtcagatagctagttataacattgtaaattagtaaagctctgaaattc |
30846175 |
T |
|
| Q |
211 |
cttgaggagaacgctaagttggctaaattaacatctcaaagcagannnnnnnccccatgtttgatagaatttgatcttattattgctttcaatcagtgag |
310 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30846176 |
cttgaggagaatgctaagttggctaaattaacatctcaaagcagatttttttccccatgtttgatagaatttgatcttattattgctttcaatcagtgag |
30846275 |
T |
|
| Q |
311 |
aataagggttcat |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30846276 |
aataagggttcat |
30846288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 1080688 - 1080814
Alignment:
| Q |
122 |
acatgtgggataaaatgaaat-ttttaagaaactttcttaatgtcagatagctagttataacatcgtaaattagtaaagctctgaaattccttgaggaga |
220 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||| ||||||||| ||| |||||||| |||||| | |||||||| ||||||||||| | || |
|
|
| T |
1080688 |
acatgtgggataaaattaaatattttaagaaatattcttcgagtcagataggtagatataacattctaaattggcaaagctct-aaattccttgaagtga |
1080786 |
T |
|
| Q |
221 |
acgctaagttggctaaattaacatctcaa |
249 |
Q |
| |
|
|| | ||||||||||||| | |||||||| |
|
|
| T |
1080787 |
acac-aagttggctaaataagcatctcaa |
1080814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University