View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17890_high_1 (Length: 503)
Name: NF17890_high_1
Description: NF17890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17890_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 49 - 486
Target Start/End: Original strand, 55695428 - 55695862
Alignment:
| Q |
49 |
ctacttttttcacatgtcaaagttgatgagaagcttttccgctttatttgtttggtttcttttgtcattgatcttattgtgaaggtaagtctatgggtat |
148 |
Q |
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| T |
55695428 |
ctacttttttcacatgtcaaagttgatgagaagcttttctgctttatttgtttggcttcttttgtcattgatcttattgtgaaggta---ctatgggtat |
55695524 |
T |
|
| Q |
149 |
ggctttacggatttattattatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatannnnnnnnnnn |
248 |
Q |
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| T |
55695525 |
ggctttacggatttattattatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatattttacttttt |
55695624 |
T |
|
| Q |
249 |
nnnnnngccgaaactctatcataatttacccacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaaggggtt |
348 |
Q |
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| T |
55695625 |
tattttgccaaaactctatcataatttactcacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaagggatt |
55695724 |
T |
|
| Q |
349 |
ttatgaaataaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactgatgacaaaaataatgcaattttgatttaaaaagttggctt |
448 |
Q |
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| T |
55695725 |
ttatgaaataaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactaatgacaaaaataatgcaattttgatttaaaaagttggctt |
55695824 |
T |
|
| Q |
449 |
gaattttgtttttctcttctgaaaggaaaggacaaaag |
486 |
Q |
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| T |
55695825 |
gaattttgtttttctcttctgaaaggaaaggacaaaag |
55695862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 55695391 - 55695419
Alignment:
| Q |
1 |
agcataaaaagtgatcagaaaggagtcta |
29 |
Q |
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| T |
55695391 |
agcataaaaagtgatcagaaaggagtcta |
55695419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 258 - 485
Target Start/End: Complemental strand, 35804064 - 35803827
Alignment:
| Q |
258 |
gaaactctatcataatttacccacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaaggggttttatgaaat |
357 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||| ||||| |||||| ||||| ||||| |
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| T |
35804064 |
gaaagtctatcataatttacccaaaggatttcagaaagaggg-aggagtgcaccacaagaaaattagaaaacaaacttttgtaaagggattttaagaaat |
35803966 |
T |
|
| Q |
358 |
aaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactgat------------gacaaaaataatgcaattttgatttaaaaagttgg |
445 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
35803965 |
aaaaccacattatcaaaaggcaagttaaagagcctta-aaaattgcaactgataaaaaaaatgacaacaaaaataatgcaattttgaattaaaaagttgg |
35803867 |
T |
|
| Q |
446 |
cttgaattttgtttttctcttctgaaaggaaaggacaaaa |
485 |
Q |
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| T |
35803866 |
cttgaattttgtttttctcttctgaaaggaagggacaaaa |
35803827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 35804319 - 35804198
Alignment:
| Q |
54 |
tttttcacatgtcaaagttgatgagaagcttttccgctttatttgtttggtttc---ttttgtcattgatcttattgtgaaggtaagtctatgggtatgg |
150 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
35804319 |
tttttcacaagtcaaagttgatgagaagcttttctattttatttgtttggttttgttttttttcattgatcttattttgaaggtaagtctttgggtatgg |
35804220 |
T |
|
| Q |
151 |
ctttacggatttattattatat |
172 |
Q |
| |
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|||||| || |||||||||||| |
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|
| T |
35804219 |
ctttacagaattattattatat |
35804198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 35804127 - 35804087
Alignment:
| Q |
197 |
gtttggtcattatgtatttctcctggtttgaataaattata |
237 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35804127 |
gtttggtcattatgtatttcttctggtttgaataaattata |
35804087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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