View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17890_high_2 (Length: 478)
Name: NF17890_high_2
Description: NF17890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17890_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 4108066 - 4108518
Alignment:
| Q |
17 |
aatttatatgttctttcttgatgtcttcgagaccatgcagattcagcaatctttatggatactaatcaaattaagtaattatcagtaataaaaattattc |
116 |
Q |
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| T |
4108066 |
aatttatatgttctttcttgatgtcttcgagaccatgcagattcagcaatctttatggatactaatcaaattaagtaattatcagtaataaaaattattc |
4108165 |
T |
|
| Q |
117 |
tacaaacagccataccacaaccctctcaaccaaattgcatgagtaatacaagataatctatgtaatacacctctaaagtttcagcaattttgtatttcct |
216 |
Q |
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| T |
4108166 |
tacaaacagccataccacaaccctctcaaccaaattgcatgagtaatacaagataatctatgtaatacacctctaaagtttcagtaattttgtatttcct |
4108265 |
T |
|
| Q |
217 |
atgctatagtactattacgttcatggacaaccaatatgctacagcatttaggaaatgagcgaagtttgtcactgaggagagatctttccaaccttatgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4108266 |
atgctatagtactattacgttcatggacaaccaatatgccacagcatttaggaaatgagcgaagtttgtcactgaggagagatctttccaaccttatgaa |
4108365 |
T |
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| Q |
317 |
cccatctctcaagcctaagttgcttcaaagcaggcccacagtcaggtttacgtttatgtgggaattgccatttccctgtaatctccatgacatttgactg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4108366 |
cccatctctcaagcctaagttgcttcaaagcaggcccacagtcaggtttacgtttatgtgggaattgccatttccctgtaatctccatgacatttgactg |
4108465 |
T |
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| Q |
417 |
ttgaaaattggttgcttctgtcagtgcctttctttttgcaacaccatattctt |
469 |
Q |
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| T |
4108466 |
ttgaaaattggttgcttctgtcagtgcctttctttttgcaacaccattttctt |
4108518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 106 - 461
Target Start/End: Original strand, 4131381 - 4131736
Alignment:
| Q |
106 |
aaaaattattctacaaacagccataccacaaccctctcaaccaaattgcatgagtaatacaagataatctatgtaatacacctctaaagtttcagcaatt |
205 |
Q |
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||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
4131381 |
aaaaattattctacaaacaaccataccaca-cactctgaaccaaattgcatgagtaatacaagatagtctatgtaatacacctcgaatgtttcagcaatt |
4131479 |
T |
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| Q |
206 |
ttgtatttccta-tgctatagtactattacgttcatggacaaccaatatgctacagcatttaggaaatgagcgaagtttgtcactgaggagagatctttc |
304 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||| ||||||||| || |||||||| |||||| || | ||||| ||||||||||| |||| |
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| T |
4131480 |
ttgtatttcctaatgttatagtactattacgttaatggacaaataatatgctatagaatttaggacatgagccaactatgtcaatgaggagagatatttc |
4131579 |
T |
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| Q |
305 |
caaccttatgaacccatctctcaagcctaagttgcttcaaagcaggcccacagtcaggtttacgtttatgtgggaattgccatttccctgtaatctccat |
404 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||| | |||||||||||||||||||| || |
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| T |
4131580 |
caaccttttgaacccatcgctcaagcctaagttgcttcaaagcaggcccacgatcaggcttacgtttctgtgggcaatgccatttccctgtaatctcgat |
4131679 |
T |
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| Q |
405 |
gacatttgactgttgaaaattggttgcttctgtcagtgcctttctttttgcaacacc |
461 |
Q |
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|||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
4131680 |
gacattggactgttgaagattggttgcttctgtcaatgcctttctctttgcaacacc |
4131736 |
T |
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