View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17890_high_5 (Length: 260)
Name: NF17890_high_5
Description: NF17890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17890_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 33326056 - 33326289
Alignment:
| Q |
11 |
caaaggactggtataaaatactaaagggagaaatgtacatgatgatactatagtggtaagaactacaaaagcacaaacacgggtaattcagagaacaata |
110 |
Q |
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| T |
33326056 |
caaaggactggaataaaatactaaagggagaaatgtacatgatgatactatagtggtaagaactacaaaagcacaaacacgggtaattcagagaacaata |
33326155 |
T |
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| Q |
111 |
cttgcctgcatcagcaaacctccatcacataaagtatgtatctccgcttctatctctgattgattcaatttcaatttgtaacatccaggtcctcctcgta |
210 |
Q |
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| T |
33326156 |
cttgcctgcatcagtaaacctccatcacataaagtatgtatctccgcttctatctctgattgattcaatttcaatttgtaacatccaggtcctcctcgta |
33326255 |
T |
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| Q |
211 |
tcatgtcaatctagaaaattgtcatggaagatga |
244 |
Q |
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| T |
33326256 |
tcatgtcaatctagaaaattgtcatggaagatga |
33326289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 33350825 - 33350968
Alignment:
| Q |
100 |
agagaacaatacttgcctgcatcagcaaacctccatcacataaagtatgtatctccgcttctatctctgattgattcaatttcaatttgtaacatccagg |
199 |
Q |
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||||||||| |||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |
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| T |
33350825 |
agagaacaa-acttgcctgcataagcaaacccccatcacgtaaagtgtgtatctccgcttctatctctgattgatttaatttcagtttgtaacttccagg |
33350923 |
T |
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| Q |
200 |
tcctcctcgtatcatgtcaatctagaaaattgtcatggaagatga |
244 |
Q |
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| T |
33350924 |
tcctcctcgtatcatgtcaatctagaaaattgttttggaagatga |
33350968 |
T |
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