View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17890_low_1 (Length: 520)
Name: NF17890_low_1
Description: NF17890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17890_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 90 - 504
Target Start/End: Original strand, 12746747 - 12747174
Alignment:
| Q |
90 |
tttagattatcttttaacaaatttataacactatata--atggagatgtaccttttttaattggattttt-----------acccttcacttgaactatt |
176 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12746747 |
tttagattatcttttaacaaatctataacactatatataatggagatgcaccttttttaattggatttttctttcatttttacccttcacttgaactatt |
12746846 |
T |
|
| Q |
177 |
t--aattgttcaatgttaccactcaccatccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactga |
274 |
Q |
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| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12746847 |
tttaattgttcaattttaccactcaccatccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacatgtaatactga |
12746946 |
T |
|
| Q |
275 |
tggagcatatttgggaaaccctggccaatcctcttgtgttggagttttcagaaactatgaaggtactgtattggttgctttgctgaaagtttgggtactc |
374 |
Q |
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|||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12746947 |
tggagcatctttgggaaaccctggccaaacc---tgtgttggagttttcagaaactttgaaggtactgtattggttgctttgctgaaagtttgggtactc |
12747043 |
T |
|
| Q |
375 |
ttacttcttatcaaactgaattgcgtggtgccatgagagcaatagaagtagcttcttaaaagc-gtggaactttctttggttggagacagattccatgtt |
473 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12747044 |
ttacttcttatcagactgaattgtgtggtgccatgagagcaataggagtagcttctcaaaagcagtggaactttctttggttggagacagattccatgtt |
12747143 |
T |
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| Q |
474 |
ggttgtccaggcttttaaaagttccattctg |
504 |
Q |
| |
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| T |
12747144 |
ggttgtccaggcttttaaaagttccattctg |
12747174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 201 - 491
Target Start/End: Original strand, 30221604 - 30221896
Alignment:
| Q |
201 |
catccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactgatggagcatatttgggaaaccctggcc |
300 |
Q |
| |
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|||||||| |||||||| ||||||||| | |||| ||||||||||||||| |||||||||| | ||||| |||||||||| |||||||| ||||| |
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| T |
30221604 |
catccaaacgctcctacaatcacagaagtaatctggaagcctcctttgtttcattgggttaagtgcaatacagatggagcatcattgggaaatcctggtt |
30221703 |
T |
|
| Q |
301 |
aatcctcttgtgttggagttttcagaaactatgaaggta-ctgtattggttgctttgctgaaagtttgggtactcttacttcttatcaaactgaattgcg |
399 |
Q |
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| ||||||||| ||| ||||||||| | | |||||||| |||||| ||||| |||||||||||||| |||| ||| ||||||||||| ||||||| | |
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| T |
30221704 |
tagcctcttgtggtggtgttttcagagattttgaaggtacctgtatgggttgttttgctgaaagtttaggtattctcacttcttatcaggctgaattatg |
30221803 |
T |
|
| Q |
400 |
tggtgccatgagagcaatagaagtagcttctta-aaagcgtggaactttctttggttggagacagattccatgttggttgtccaggcttttaa |
491 |
Q |
| |
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||| ||||||||||| |||||||| || | | | ||| ||||||||||||||||| ||||||||||| |||||||| || || |||||||| |
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| T |
30221804 |
tggggccatgagagctatagaagtggcgtatcagaaacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaa |
30221896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 201 - 491
Target Start/End: Complemental strand, 17628285 - 17627993
Alignment:
| Q |
201 |
catccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactgatggagcatatttgggaaaccctggcc |
300 |
Q |
| |
|
|||||||| |||||||| ||||||||| | |||| ||||||||||||||| |||||||||| | ||||| |||||||||| |||||||| ||||| |
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| T |
17628285 |
catccaaacgctcctacaatcacagaagtaatctggaagcctcctttgtttcattgggttaagtgcaatacagatggagcatcattgggaaatcctggtt |
17628186 |
T |
|
| Q |
301 |
aatcctcttgtgttggagttttcagaaactatgaaggta-ctgtattggttgctttgctgaaagtttgggtactcttacttcttatcaaactgaattgcg |
399 |
Q |
| |
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| ||||||||| ||| ||||||||| | | |||||||| |||||| ||||| |||||||||||||| |||| ||| ||||||||||| ||||||| | |
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| T |
17628185 |
tagcctcttgtggtggtgttttcagagattttgaaggtacctgtatgggttgttttgctgaaagtttaggtattctcacttcttatcaggctgaattatg |
17628086 |
T |
|
| Q |
400 |
tggtgccatgagagcaatagaagtagcttctta-aaagcgtggaactttctttggttggagacagattccatgttggttgtccaggcttttaa |
491 |
Q |
| |
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||| ||||||||||| |||||||| || | | | ||| ||||||||||||||||| ||||||||||| |||||||| || || |||||||| |
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| T |
17628085 |
tggggccatgagagctatagaagtggcgtatcagaaacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaa |
17627993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 201 - 491
Target Start/End: Original strand, 32022002 - 32022294
Alignment:
| Q |
201 |
catccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactgatggagcatatttgggaaaccctggcc |
300 |
Q |
| |
|
|||||||| |||||||| ||||||||| | |||| ||||||||||||||| |||||||||| | ||||| |||||||||| |||||||| ||||| |
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| T |
32022002 |
catccaaacgctcctacaatcacagaagtaatctggaagcctcctttgtttcattgggttaagtgcaatacagatggagcatcattgggaaatcctggtt |
32022101 |
T |
|
| Q |
301 |
aatcctcttgtgttggagttttcagaaactatgaaggta-ctgtattggttgctttgctgaaagtttgggtactcttacttcttatcaaactgaattgcg |
399 |
Q |
| |
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| ||||||||| ||| ||||||||| | | |||||||| |||||| ||||| |||||||||||||| |||| ||| ||||||||||| ||||||| | |
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| T |
32022102 |
tagcctcttgtggtggtgttttcagagattttgaaggtacctgtatgggttgttttgctgaaagtttaggtattctcacttcttatcaggctgaattatg |
32022201 |
T |
|
| Q |
400 |
tggtgccatgagagcaatagaagtagcttctta-aaagcgtggaactttctttggttggagacagattccatgttggttgtccaggcttttaa |
491 |
Q |
| |
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||| ||||||||||| |||||||| || | | | ||| ||||||||||||||||| ||||||||||| |||||||| || || |||||||| |
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| T |
32022202 |
tggggccatgagagctatagaagtggcgtatcagaaacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaa |
32022294 |
T |
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