View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17891_high_12 (Length: 217)
Name: NF17891_high_12
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17891_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 32708669 - 32708764
Alignment:
| Q |
49 |
gaggtaatcaatatgaagggagaagtaaagtgttttcaagtttaagttagttgagggattttaatgctttctcatcaagacattgatttacaaaga |
144 |
Q |
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| T |
32708669 |
gaggtaatcaatatgaagggagaagtaaagtgttttgaagtttaagttagttgagggatttgaatgctttctcatcaagacattgatttacaaaga |
32708764 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 32672955 - 32673050
Alignment:
| Q |
49 |
gaggtaatcaatatgaagggagaagtaaagtgttttcaagtttaagttagttgagggattttaatgctttctcatcaagacattgatttacaaaga |
144 |
Q |
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| T |
32672955 |
gaggtgatcaatatggagggagaagtaaagtgttttgaagtttaagttagttgagggatttgaatgctttctcatcaagacattgatttacaaaga |
32673050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 28601921 - 28602017
Alignment:
| Q |
49 |
gaggtaatcaatatgaagggagaagtaaagtgttttcaagttt-aagttagttgagggattttaatgctttctcatcaagacattgatttacaaaga |
144 |
Q |
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| T |
28601921 |
gaggtaatcaatatggagggagaagtaaagtgttttgaagttttaagttagttgagggacttgaatgctttctcatcaagacattgattcacaaaga |
28602017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 32708784 - 32708837
Alignment:
| Q |
145 |
tgctaagttgttgctggtaggtagagctgtattttggtttcaaataaaaggttgtttc |
202 |
Q |
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| T |
32708784 |
tgctaagttgttgctggta----gagctgtactttggtttcaaataaaaggttgtttc |
32708837 |
T |
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