View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17891_low_1 (Length: 769)
Name: NF17891_low_1
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17891_low_1 |
 | |
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| [»] chr3 (6 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 661; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 1 - 769
Target Start/End: Original strand, 1628667 - 1629446
Alignment:
| Q |
1 |
ccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgat--------aactgtcataaacaacataattcaaaggac |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1628667 |
ccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataacttgataactgtcataaacaacataattcaaaggac |
1628766 |
T |
|
| Q |
93 |
ggaagagaaatacataagctgcggtgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacatactactgtggcgtt |
192 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1628767 |
ggaagcgaaatacataagttgcggtgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacatactactgtggcgtt |
1628866 |
T |
|
| Q |
193 |
agcaactactcattggtttggtgtgcacctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccaaaggcgat |
292 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1628867 |
agcaactactcattggtttggtgtccacctcaagtgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccacaggcgat |
1628966 |
T |
|
| Q |
293 |
gcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgacatattgactttt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1628967 |
gcatggcctcatgcacctcgcgcataggacttaattttatatatatttttaaaatgacaagatgcttatttgttacttagtttctgacatattgactttt |
1629066 |
T |
|
| Q |
393 |
taaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatgaata---atatctctctcaatatacaaattaaagaa |
489 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1629067 |
taaacatagatccgctggatcatcaaagttgaacttgtaaagtagtacaaaattaaagaatatgaataattatatctctctcaatatacaaattaaagaa |
1629166 |
T |
|
| Q |
490 |
tattgacacattttctttttagaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaa |
589 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |
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|
| T |
1629167 |
tattgacacattttcttttaagaattacaatgaatttaattacaaataactatgtagaataattgaattaatgaagagatatagctataccaaaatacaa |
1629266 |
T |
|
| Q |
590 |
atgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtt |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1629267 |
atgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaactttgatgcttcctttgggtt |
1629366 |
T |
|
| Q |
690 |
tgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
769 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1629367 |
tgatatcacatgataaccaggccatttcaccctatttgctgttgatgaaccaggtccataattctcatactctccataat |
1629446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 510 - 769
Target Start/End: Original strand, 1605891 - 1606148
Alignment:
| Q |
510 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
609 |
Q |
| |
|
|||||||||||||| ||||||||| | || || ||| ||||| ||| |||||||| ||| |||||| || || | |||||||||||||||||||||| |
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|
| T |
1605891 |
agaattacaatgaacttaattacaaagaattaagtacaataactgaggcaatgaagaaata--gctatagcacaacataaatgatcaaagaccagatgta |
1605988 |
T |
|
| Q |
610 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtttgttatcacatgataaccag |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||| |
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|
| T |
1605989 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaactttgatgcttcattagggtttgatatcacatgataaccag |
1606088 |
T |
|
| Q |
710 |
gccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
769 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606089 |
gccattttactctatttgctgttgatgaaccaggtccataattctcatactctccataat |
1606148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 586 - 769
Target Start/End: Complemental strand, 10821435 - 10821252
Alignment:
| Q |
586 |
acaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttg |
685 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
10821435 |
acaaatgatcaaagaccagatgtaaatggcacagtagttttagccaaccatgttggaccagcaaggagtccagcaaccgtaaactttgatgcttcctttg |
10821336 |
T |
|
| Q |
686 |
ggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
769 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10821335 |
ggtttgttatcacatgataaccaggccaatttaccctgtttgttgttgatgaaccaggtccataattctcatactctccataat |
10821252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 570 - 769
Target Start/End: Original strand, 1623071 - 1623270
Alignment:
| Q |
570 |
atagctataccataaaacaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaac |
669 |
Q |
| |
|
||||||||| || || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1623071 |
atagctatagcacaacataaatgatcaaagaccagatgtaaatggcacggtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaac |
1623170 |
T |
|
| Q |
670 |
tttgatgcttcctttgggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
769 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
1623171 |
tttgatgcttcctttcggtttgttatcacatgataaccaggccattttactctatttgttgttgatgaaccaggtccatagttttcatactctccataat |
1623270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 188 - 533
Target Start/End: Complemental strand, 10821778 - 10821438
Alignment:
| Q |
188 |
gcgttagcaactactcattggtttggtgtgcacctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccaaag |
287 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||| | |||||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |
|
|
| T |
10821778 |
gcgttagcaactcatccttggtttgctatgcacctcatgtgtttccttctgcgcctagcgcgtgctgatgagatatcaaggagatgagcaactgtcacgc |
10821679 |
T |
|
| Q |
288 |
gcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgacatattga |
387 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| || ||| | | ||||| ||| ||| ||| |||||||||||| |||||| ||| ||||||| |
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|
| T |
10821678 |
gcgacgcatggcctcatgcgcctcgcgcataggactt--ttctat-tttttttttaaaattacaagattcttatttgttacatagtttatgatatattga |
10821582 |
T |
|
| Q |
388 |
ctttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatg---aataatatctctctcaatatacaaatta |
484 |
Q |
| |
|
||||||||||||| ||| || | |||||||||| ||||||||| |||| ||||| || ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10821581 |
ctttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtaca-----aaggaatatgaataataatatctctctcaatatacaaatta |
10821487 |
T |
|
| Q |
485 |
aagaatattgacacattttctttttagaattacaatgaatttaattaca |
533 |
Q |
| |
|
|||||||||||| ||| ||||| | |||||||||||||||||||||| |
|
|
| T |
10821486 |
aagaatattgactcatgttcttacaaaaattacaatgaatttaattaca |
10821438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 10821868 - 10821806
Alignment:
| Q |
117 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacata |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10821868 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacatgcacgagtctcgcgcatggacata |
10821806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 510 - 769
Target Start/End: Original strand, 18780707 - 18780964
Alignment:
| Q |
510 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
609 |
Q |
| |
|
|||||||||||||||||||||||| | || || ||| ||||||||| |||||||| ||| |||||| || || | ||| |||||||||||||||||| |
|
|
| T |
18780707 |
agaattacaatgaatttaattacaaagaattaagtacaataattgaagcaatgaagaaata--gctatagcacaacataaaagatcaaagaccagatgta |
18780804 |
T |
|
| Q |
610 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtttgttatcacatgataaccag |
709 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
18780805 |
aatggcacagtagttgtagccagccatgttggtccagtaatgagtccagcaaccgtaaactttgatgcttccttagggtttgttatcgcatgataaccag |
18780904 |
T |
|
| Q |
710 |
gccatttcaccctgtttgctgttgatgaaccaggtccataattctcatactctccataat |
769 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18780905 |
gccattttactctatttgctgttgatgaaccaggtccataattctcatactcgccataat |
18780964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 37545259 - 37545197
Alignment:
| Q |
2 |
caaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataa |
64 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||| ||| ||||||||| |||||||||||| |
|
|
| T |
37545259 |
caaccattacataaaggttcatcattcaatcataatctattaaagtttagatacacatgataa |
37545197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 29413315 - 29413160
Alignment:
| Q |
1 |
ccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatg------ataactgtcataaacaacataattcaaaggacgg |
94 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| ||| ||||||||||||||||||| || || | ||| ||||||||||||||| |||| || |
|
|
| T |
29413315 |
ccaaccattacataattgtttatcattcaatcataaaatatgaaagtttagttacacttgattccaatcagtgtaataaacaacataatttaaagagtgg |
29413216 |
T |
|
| Q |
95 |
aagagaaatacataagctgcggtgttgatcctcaaacttgtttccaaaccttcaaa |
150 |
Q |
| |
|
||||||||||||||| | |||| |||| | |||||||||| ||| |||||||| |
|
|
| T |
29413215 |
aagagaaatacataaacacatgtgtagatctttaaacttgttttcaagccttcaaa |
29413160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 7674195 - 7674242
Alignment:
| Q |
18 |
gttcatcattcaatcctaatttatgaaagtttagttacacatgataac |
65 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
7674195 |
gttcatcattcaatcctaatctacgagagtttagttacacatgataac |
7674242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 8320071 - 8320002
Alignment:
| Q |
19 |
ttcatcattcaatcctaatttatgaaagtttagttacacatgataactgtcataaacaacataattcaaa |
88 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||||| || |||||||||| | |||||| |
|
|
| T |
8320071 |
ttcatcattcaatcataatttatgagagtttagttacacgtgatactagtaataaacaacaaagttcaaa |
8320002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 36296210 - 36296257
Alignment:
| Q |
18 |
gttcatcattcaatcctaatttatgaaagtttagttacacatgataac |
65 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
36296210 |
gttcatgattcaatcctaatctatgagagtttagttacacataataac |
36296257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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