View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17891_low_11 (Length: 247)

Name: NF17891_low_11
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17891_low_11
NF17891_low_11
[»] chr7 (35 HSPs)
chr7 (2-114)||(28770511-28770623)
chr7 (111-232)||(9819875-9819996)
chr7 (111-232)||(10721800-10721921)
chr7 (1-114)||(28663099-28663212)
chr7 (1-121)||(35496526-35496646)
chr7 (1-106)||(27123307-27123412)
chr7 (1-112)||(44537374-44537485)
chr7 (1-114)||(35731320-35731432)
chr7 (1-83)||(7653609-7653691)
chr7 (5-111)||(14651353-14651459)
chr7 (9-107)||(35923474-35923568)
chr7 (1-112)||(21727368-21727479)
chr7 (1-108)||(39320948-39321055)
chr7 (1-91)||(43224070-43224160)
chr7 (9-111)||(43234831-43234932)
chr7 (1-108)||(3692910-3693018)
chr7 (20-111)||(26239504-26239595)
chr7 (3-83)||(25886205-25886285)
chr7 (2-78)||(32051330-32051404)
chr7 (3-83)||(34117862-34117942)
chr7 (9-115)||(9718954-9719059)
chr7 (1-84)||(40753937-40754019)
chr7 (26-80)||(48488172-48488226)
chr7 (2-114)||(8920663-8920775)
chr7 (63-110)||(38988802-38988849)
chr7 (1-72)||(42936040-42936109)
chr7 (1-83)||(10200602-10200683)
chr7 (44-90)||(27359433-27359479)
chr7 (17-83)||(36973386-36973452)
chr7 (59-120)||(10031876-10031937)
chr7 (26-83)||(23015645-23015702)
chr7 (1-62)||(27337730-27337791)
chr7 (51-112)||(47754470-47754531)
chr7 (50-86)||(11914867-11914903)
chr7 (51-107)||(31902718-31902773)
[»] chr1 (35 HSPs)
chr1 (1-112)||(2864175-2864285)
chr1 (1-112)||(43396977-43397088)
chr1 (1-117)||(3982298-3982413)
chr1 (1-112)||(38748684-38748794)
chr1 (1-84)||(39150615-39150698)
chr1 (2-107)||(31889196-31889302)
chr1 (1-110)||(45640580-45640688)
chr1 (1-83)||(47187812-47187894)
chr1 (1-72)||(40460725-40460796)
chr1 (1-111)||(44329629-44329739)
chr1 (1-82)||(4851237-4851318)
chr1 (1-111)||(39156294-39156408)
chr1 (1-114)||(44829305-44829417)
chr1 (1-120)||(7750464-7750582)
chr1 (1-113)||(8794449-8794562)
chr1 (1-56)||(38491254-38491309)
chr1 (7-109)||(34409773-34409874)
chr1 (1-83)||(44329497-44329579)
chr1 (71-119)||(27585211-27585259)
chr1 (1-112)||(34232673-34232780)
chr1 (51-110)||(30822741-30822799)
chr1 (1-106)||(39914576-39914678)
chr1 (1-76)||(48022351-48022426)
chr1 (1-83)||(7212806-7212883)
chr1 (51-109)||(8454283-8454341)
chr1 (1-82)||(6883120-6883201)
chr1 (1-78)||(32562350-32562426)
chr1 (1-68)||(8365536-8365603)
chr1 (1-112)||(14746162-14746273)
chr1 (17-111)||(14758608-14758701)
chr1 (9-80)||(18432947-18433018)
chr1 (73-112)||(36622037-36622076)
chr1 (51-108)||(46087178-46087235)
chr1 (1-81)||(17552866-17552946)
chr1 (1-80)||(36563737-36563814)
[»] chr6 (21 HSPs)
chr6 (2-114)||(32823711-32823823)
chr6 (1-112)||(31855087-31855198)
chr6 (1-107)||(17215650-17215756)
chr6 (1-111)||(19293416-19293526)
chr6 (1-83)||(7421705-7421787)
chr6 (1-69)||(1841016-1841084)
chr6 (12-80)||(30801785-30801853)
chr6 (2-107)||(28874433-28874538)
chr6 (1-106)||(9762835-9762939)
chr6 (1-107)||(27778788-27778891)
chr6 (1-78)||(2692427-2692503)
chr6 (1-109)||(30739632-30739740)
chr6 (5-112)||(5446626-5446731)
chr6 (53-108)||(23399195-23399250)
chr6 (2-89)||(18737797-18737884)
chr6 (1-84)||(1479083-1479165)
chr6 (9-83)||(2864917-2864992)
chr6 (1-62)||(26669291-26669352)
chr6 (9-112)||(2884128-2884234)
chr6 (64-112)||(27843169-27843217)
chr6 (51-111)||(34530346-34530406)
[»] chr2 (24 HSPs)
chr2 (1-107)||(1334851-1334957)
chr2 (1-80)||(19890183-19890262)
chr2 (1-108)||(31452313-31452419)
chr2 (1-107)||(41933164-41933270)
chr2 (1-117)||(15505577-15505693)
chr2 (2-84)||(9448944-9449026)
chr2 (1-83)||(29239240-29239322)
chr2 (2-84)||(19514905-19514987)
chr2 (1-107)||(31017275-31017381)
chr2 (1-107)||(34904755-34904861)
chr2 (3-84)||(4762384-4762465)
chr2 (1-110)||(37993111-37993220)
chr2 (1-78)||(20064944-20065020)
chr2 (1-113)||(42966990-42967102)
chr2 (32-114)||(3655706-3655788)
chr2 (5-79)||(38533864-38533938)
chr2 (45-106)||(21431133-21431194)
chr2 (1-83)||(9173697-9173780)
chr2 (1-60)||(11944888-11944946)
chr2 (4-114)||(14663140-14663250)
chr2 (5-79)||(38533341-38533415)
chr2 (34-107)||(40347915-40347987)
chr2 (51-111)||(815078-815137)
chr2 (51-107)||(35443460-35443516)
[»] chr8 (31 HSPs)
chr8 (1-110)||(42636330-42636439)
chr8 (1-109)||(1135194-1135302)
chr8 (1-122)||(28207657-28207778)
chr8 (1-82)||(27801218-27801299)
chr8 (1-108)||(33013078-33013184)
chr8 (1-109)||(1369824-1369932)
chr8 (1-111)||(37427224-37427333)
chr8 (1-78)||(35901964-35902041)
chr8 (1-111)||(4384099-4384208)
chr8 (1-123)||(12829824-12829944)
chr8 (1-117)||(33949508-33949623)
chr8 (26-113)||(26750608-26750695)
chr8 (1-83)||(3146069-3146155)
chr8 (9-83)||(36355948-36356022)
chr8 (1-78)||(24695780-24695856)
chr8 (51-112)||(24733254-24733315)
chr8 (1-69)||(33067535-33067603)
chr8 (7-78)||(12684490-12684561)
chr8 (1-83)||(884450-884531)
chr8 (1-69)||(37813410-37813475)
chr8 (1-110)||(45197410-45197519)
chr8 (13-80)||(2258085-2258152)
chr8 (1-112)||(39691078-39691187)
chr8 (1-62)||(167856-167917)
chr8 (51-115)||(32133655-32133719)
chr8 (1-60)||(3520822-3520881)
chr8 (17-116)||(31265046-31265144)
chr8 (51-109)||(44960545-44960603)
chr8 (17-86)||(14237177-14237245)
chr8 (26-107)||(41429571-41429652)
chr8 (64-104)||(7691333-7691373)
[»] chr5 (24 HSPs)
chr5 (1-110)||(30104837-30104946)
chr5 (1-109)||(16667257-16667365)
chr5 (1-117)||(8221155-8221271)
chr5 (1-113)||(18229563-18229675)
chr5 (1-112)||(39558729-39558840)
chr5 (1-110)||(30501103-30501213)
chr5 (1-110)||(30541446-30541556)
chr5 (1-81)||(9276573-9276653)
chr5 (1-113)||(34899098-34899209)
chr5 (1-83)||(7719237-7719319)
chr5 (26-91)||(7968448-7968513)
chr5 (3-110)||(23117191-23117298)
chr5 (1-111)||(17692295-17692404)
chr5 (1-116)||(3140847-3140962)
chr5 (1-83)||(15720100-15720182)
chr5 (1-84)||(2918586-2918670)
chr5 (9-110)||(13480060-13480162)
chr5 (16-84)||(5815061-5815129)
chr5 (1-107)||(8208212-8208318)
chr5 (2-83)||(112477-112558)
chr5 (1-64)||(40530445-40530508)
chr5 (62-112)||(14166725-14166775)
chr5 (1-50)||(8247100-8247149)
chr5 (52-108)||(14474967-14475023)
[»] chr4 (41 HSPs)
chr4 (1-111)||(8261141-8261251)
chr4 (1-111)||(8274558-8274668)
chr4 (1-110)||(50341831-50341940)
chr4 (9-110)||(7852508-7852609)
chr4 (3-120)||(45900103-45900220)
chr4 (1-111)||(7444348-7444458)
chr4 (1-89)||(8297904-8297992)
chr4 (1-108)||(51834947-51835054)
chr4 (1-80)||(35777693-35777772)
chr4 (1-107)||(41462082-41462187)
chr4 (2-84)||(50427023-50427105)
chr4 (1-78)||(31429310-31429387)
chr4 (1-112)||(47995699-47995810)
chr4 (1-109)||(37138127-37138235)
chr4 (1-109)||(36702817-36702921)
chr4 (2-111)||(24175362-24175471)
chr4 (39-111)||(23605630-23605702)
chr4 (3-82)||(34391699-34391778)
chr4 (1-110)||(25115228-25115336)
chr4 (1-69)||(27953046-27953114)
chr4 (9-77)||(53014203-53014271)
chr4 (2-83)||(24229637-24229718)
chr4 (1-82)||(49400645-49400726)
chr4 (1-108)||(31690415-31690521)
chr4 (9-115)||(13585221-13585326)
chr4 (1-83)||(37440859-37440941)
chr4 (1-66)||(49084408-49084474)
chr4 (2-66)||(14031347-14031411)
chr4 (17-119)||(38949015-38949116)
chr4 (18-112)||(39767257-39767351)
chr4 (8-82)||(42222995-42223069)
chr4 (1-90)||(48337589-48337679)
chr4 (1-62)||(39195739-39195800)
chr4 (51-112)||(40252737-40252798)
chr4 (1-82)||(20394671-20394750)
chr4 (44-83)||(37060625-37060664)
chr4 (2-77)||(43969180-43969257)
chr4 (71-104)||(27953139-27953172)
chr4 (51-111)||(32692916-32692976)
chr4 (21-61)||(37383768-37383808)
chr4 (1-108)||(41370135-41370241)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-108)||(62491-62598)
[»] chr3 (23 HSPs)
chr3 (1-112)||(48180133-48180244)
chr3 (1-108)||(24791529-24791638)
chr3 (1-108)||(29083865-29083973)
chr3 (12-83)||(51351321-51351392)
chr3 (53-119)||(46093516-46093582)
chr3 (1-84)||(26900013-26900096)
chr3 (1-86)||(16663010-16663095)
chr3 (1-77)||(40673467-40673543)
chr3 (1-60)||(42846019-42846079)
chr3 (1-89)||(52249359-52249447)
chr3 (1-112)||(39551818-39551928)
chr3 (1-111)||(41309816-41309927)
chr3 (1-60)||(49362368-49362427)
chr3 (1-79)||(47638928-47639006)
chr3 (2-110)||(12086727-12086835)
chr3 (51-111)||(34591053-34591113)
chr3 (1-108)||(35177782-35177889)
chr3 (1-108)||(48811335-48811441)
chr3 (51-120)||(25317887-25317956)
chr3 (34-83)||(26143164-26143213)
chr3 (93-122)||(29385747-29385776)
chr3 (1-62)||(42939865-42939926)
chr3 (52-108)||(30463922-30463978)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-115)||(103608-103722)
[»] scaffold0268 (1 HSPs)
scaffold0268 (1-83)||(20240-20321)
[»] scaffold0419 (1 HSPs)
scaffold0419 (2-107)||(1099-1204)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-90)||(25111-25201)
[»] scaffold1444 (2 HSPs)
scaffold1444 (52-107)||(884-939)
scaffold1444 (1-55)||(1723-1777)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-62)||(1441-1502)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 28770511 - 28770623
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtta 101  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  28770511 aaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttagagtgcttaaagagtgttccggaggcactcgtta 28770610  T
Q  102 acatttcccttta 114  Q
    |||||||||||||    
T  28770611 acatttcccttta 28770623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 9819996 - 9819875
Alignment:
Q  111 tttaaaaaattaagttatcggttaaatatgttaaatagggaactaactaaaaatttcgtcgttggttggcttaatctcaactgtatcatagtctaattga 210  Q
    |||||||||||||| || |||||||||||||||||||  |||||||||||  | ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  9819996 tttaaaaaattaagctaccggttaaatatgttaaataatgaactaactaaccaattcgtcgttggttggtttaatctaaactgtatcatagtctaattga 9819897  T
Q  211 acaagatttaactaacgattat 232  Q
    ||||||||||||||||||||||    
T  9819896 acaagatttaactaacgattat 9819875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 10721921 - 10721800
Alignment:
Q  111 tttaaaaaattaagttatcggttaaatatgttaaatagggaactaactaaaaatttcgtcgttggttggcttaatctcaactgtatcatagtctaattga 210  Q
    |||||||||||||| || |||||||||||||||||||  |||||||||||  | ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  10721921 tttaaaaaattaagctaccggttaaatatgttaaataatgaactaactaaccaattcgtcgttggttggtttaatctaaactgtatcatagtctaattga 10721822  T
Q  211 acaagatttaactaacgattat 232  Q
    ||||||||||||||||||||||    
T  10721821 acaagatttaactaacgattat 10721800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 28663212 - 28663099
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||| || | |||    
T  28663212 aaaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaagagtgccccggaggcattcgtt 28663113  T
Q  101 aacatttcccttta 114  Q
    ||||||||| ||||    
T  28663112 aacatttccattta 28663099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35496646 - 35496526
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | ||||||||| || |||| |||||||||||||||||| |||||||||| ||||||||||| |||| | |||| |||    
T  35496646 aaaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaacttaccatttaaagtgtttaaagagtgccccgggggcactcgtt 35496547  T
Q  101 aacatttccctttaaaaaatt 121  Q
    |||||||||| ||||||||||    
T  35496546 aacatttcccattaaaaaatt 35496526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 27123307 - 27123412
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| ||||||| | || |||||||||| |||||||||||| |||||||||||||||||||||| |||| | |||| |||    
T  27123307 aaaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttaccatttaaagtgcttaaagagtgccccgggggcactcgtt 27123406  T
Q  101 aacatt 106  Q
    ||||||    
T  27123407 aacatt 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 44537374 - 44537485
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||| |||||||  || ||  |||| | |||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||    
T  44537374 aaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttactatttaaagtgcttaaagagtgccccgggggcactcgtt 44537473  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  44537474 aacatttccctt 44537485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 35731320 - 35731432
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| ||||| | |||| ||||||||| || || ||||||||| |||||||||||||||||||| |||| | |||| |||    
T  35731320 aaaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttactaattaaagtgcttaaagagtgc-ccgggggcactcgtt 35731418  T
Q  101 aacatttcccttta 114  Q
    ||||||||||||||    
T  35731419 aacatttcccttta 35731432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7653609 - 7653691
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||||||| ||||||| || |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  7653609 aaaaagtcaactattataatttccaattcattcattacacaacttttcattaaaaacttactttttaaagtgcttaaagagtg 7653691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 14651459 - 14651353
Alignment:
Q  5 agtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaaca 104  Q
    |||||||| ||||||||||| ||||| ||| || ||||||||||||||||||| |||||||| ||||||||||||||||| |||  | |||| |||||||    
T  14651459 agtcaactgttacaatttccaatgcaatcattacacaacttttcattaaaaacctactattttaagtgcttaaagagtgccccgagggcactcgttaaca 14651360  T
Q  105 tttccct 111  Q
    |||||||    
T  14651359 tttccct 14651353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 35923568 - 35923474
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacattt 107  Q
    |||||||||||||||| ||||||||||||    |||||||| |||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||    
T  35923568 aactattacaatttccaatgcattcaata----acttttcaataaaaacttattatttaaagtgtttaaagagtgttccggagacactcgttaacattt 35923474  T

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Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 21727479 - 21727368
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| || ||||||||| |||| | || ||||||||||||  |||| ||||||||||||||||| ||  || |||| |||    
T  21727479 aaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatttgaagtgcttaaagagtgccccaaaggcactcgtt 21727380  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  21727379 aacatttccctt 21727368  T

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Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39321055 - 39320948
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | ||| |||||||| ||||||||| || |||||||||||| |||||||||||||||||||   |  ||||||| |||    
T  39321055 aaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttactaattaaagtgcttaaagagtgtctcaaagacactcgtt 39320956  T
Q  101 aacatttc 108  Q
    ||||||||    
T  39320955 aacatttc 39320948  T

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Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 43224160 - 43224070
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggag 91  Q
    |||||||||||| ||||||||||| ||| ||  |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  43224160 aaaaagtcaactgttacaatttccaatgtatgtaatacacaacttttcattaaaaacttgctatttaaagtgcttaaagaatgccccggag 43224070  T

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Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 43234831 - 43234932
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    ||||||||||||||||  | ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||  | |||| |||||||||||    
T  43234831 aactattacaatttccattacattcaatacataacttttcattaaaaatttactatttaaagtgcttaaagagtgc-ccgagggcactcgttaacatttc 43234929  T
Q  109 cct 111  Q
    |||    
T  43234930 cct 43234932  T

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Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3692910 - 3693018
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaa-acttactatttaaagtgcttaaagagtgctccggagacacttgt 99  Q
    ||||| |||||||||||||||||| ||||| |||||| |||| ||||||| |||| |||||||| ||||| | |||||||||||| ||||| ||||| ||    
T  3692910 aaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatacttaaagagtgccccggaaacactcgt 3693009  T
Q  100 taacatttc 108  Q
    |||||||||    
T  3693010 taacatttc 3693018  T

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Target: chr7; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 26239595 - 26239504
Alignment:
Q  20 tttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccct 111  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | |  ||  |||||||||||||||||||    
T  26239595 tttccaatgcattgaatatacaatttttcattaaaaacttactatttaaagtgtttaaagagtaccctagaagcacttgttaacatttccct 26239504  T

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Target: chr7; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 25886205 - 25886285
Alignment:
Q  3 aaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||||||||||| | || |||| |||| ||||||||||||  ||||||||| |||||||||| ||||||||||    
T  25886205 aaagtcaactattacaattttcaatacatttaatacacaacttttcatataaaacttaccatttaaagtgtttaaagagtg 25886285  T

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Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 32051404 - 32051330
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    ||||||||||||| ||||||| |   ||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  32051404 aaaagtcaactatgacaattttcatagcattcaatata--atttttcattaaaaacttactatttaaagtgcttaaa 32051330  T

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Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 34117942 - 34117862
Alignment:
Q  3 aaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||||||||||||| |||||| |||| || | ||||||| |||| ||||||||||||  ||||||| |||||||||||||    
T  34117942 aaagtcaactattacgatttccaatgcgttaattatacaattttttattaaaaacttatcatttaaaatgcttaaagagtg 34117862  T

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Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 9719059 - 9718954
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    |||| ||||||||| | ||| ||||| || | ||||||||||  ||||||||| ||||||||||||||||||||| || |  |||||| |||||||||||    
T  9719059 aactgttacaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtg-tctgaggacactcgttaacatttc 9718961  T
Q  109 cctttaa 115  Q
    || ||||    
T  9718960 ccattaa 9718954  T

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Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 40754019 - 40753937
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    ||||| |||||||||||| ||||  || |||| |||| ||||||||||||||||||||||  ||||||| || |||||||||||    
T  40754019 aaaaaatcaactattacattttca-atacatttaatacacaacttttcattaaaaacttatcatttaaaatgtttaaagagtgc 40753937  T

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Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 48488226 - 48488172
Alignment:
Q  26 atgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaaga 80  Q
    ||||||| |||| | ||||||||||||||||||||  ||||||||||||||||||    
T  48488226 atgcattgaatacataacttttcattaaaaacttatcatttaaagtgcttaaaga 48488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 8920775 - 8920663
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtta 101  Q
    ||||||||| | || |||||||| ||||||| | || | |||||||||  ||||| ||||  |||||||  |||||||||||| || | | |||| ||||    
T  8920775 aaaagtcaaatgtttcaatttccaatgcattgattacataacttttcaaaaaaaaattaccttttaaaggtcttaaagagtgccccagggccactcgtta 8920676  T
Q  102 acatttcccttta 114  Q
    |||||||||||||    
T  8920675 acatttcccttta 8920663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 38988802 - 38988849
Alignment:
Q  63 atttaaagtgcttaaagagtgctccggagacacttgttaacatttccc 110  Q
    |||||||||||||||  ||||||||| || ||||||||||||||||||    
T  38988802 atttaaagtgcttaatcagtgctccgaaggcacttgttaacatttccc 38988849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42936040 - 42936109
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtg 72  Q
    ||||| |||||||||||||||| | ||||||| |||| |||| |||||||| ||||||| ||||||||||||    
T  42936040 aaaaaatcaactattacaattt-caatgcatttaatacacaatttttcatt-aaaacttgctatttaaagtg 42936109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10200602 - 10200683
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||  ||||||||||  ||||||| |||| | ||||||  || |||||||||  |||||||||||||||||||||    
T  10200602 aaaaagtcaaccgttacaatttcaaatgcattaaatacataactttctat-aaaaacttatcatttaaagtgcttaaagagtg 10200683  T

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Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 27359433 - 27359479
Alignment:
Q  44 ttttcattaaaaacttactatttaaagtgcttaaagagtgctccgga 90  Q
    ||||||| ||||| |||||||||||||  ||||||||||||||||||    
T  27359433 ttttcataaaaaagttactatttaaaggtcttaaagagtgctccgga 27359479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 36973386 - 36973452
Alignment:
Q  17 caatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||| ||||| | ||||||||| ||||||| ||||| ||||||||||||   |||||||||||    
T  36973386 caatttccaatgcaataaatatacaaattttcataaaaaaattactatttaaaacccttaaagagtg 36973452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 10031937 - 10031876
Alignment:
Q  59 tactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctttaaaaaat 120  Q
    ||||||||| ||| |||||||||||| ||  | ||||||||||||||||||| ||| |||||    
T  10031937 tactatttatagtccttaaagagtgcccctaaaacacttgttaacatttcccattataaaat 10031876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 23015702 - 23015645
Alignment:
Q  26 atgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||| |||||| |||| ||||||| |||||||||||| ||||||| |||||| ||||    
T  23015702 atgcactcaatacacaatttttcataaaaaacttactaattaaagttcttaaacagtg 23015645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27337730 - 27337791
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttact 62  Q
    ||||| |||||||||||| ||| | || |||| |||| |||||||||||| |||||||||||    
T  27337730 aaaaaatcaactattacagtttacaatacattaaatacacaacttttcataaaaaacttact 27337791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 47754531 - 47754470
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctt 112  Q
    |||||| |||||||||||||  |||||||||||| || | | |||| |||||||||||||||    
T  47754531 taaaaatttactatttaaaggtcttaaagagtgccccaggggcactcgttaacatttccctt 47754470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 11914903 - 11914867
Alignment:
Q  50 ttaaaaacttactatttaaagtgcttaaagagtgctc 86  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  11914903 ttaaaaacttactatctaaagtccttaaagagtgctc 11914867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 31902773 - 31902718
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacattt 107  Q
    |||||| |||||||||||||| ||||||||||||| ||| | |||| ||||||||||    
T  31902773 taaaaatttactatttaaagtccttaaagagtgct-cgggggcactcgttaacattt 31902718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 2864175 - 2864285
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||    
T  2864175 aaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccgg-ggcactcgtt 2864273  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  2864274 aacatttccctt 2864285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 43397088 - 43396977
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||||| |||  | |||| |||    
T  43397088 aaaaagtcaactattataatttccaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgtttaacgagtgcgccgagggcactcgtt 43396989  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  43396988 aacatttccctt 43396977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3982298 - 3982413
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||| |||||   ||||||| |||| ||||||||| || ||||| ||||||||||||||| ||||||||||| ||||||||||| |||    
T  3982298 aaaaagtcaactattataatttataatgcattgaatagacaacttttaat-aaaaatttactatttaaagtgtttaaagagtgcaccggagacactcgtt 3982396  T
Q  101 aacatttccctttaaaa 117  Q
    |||||||||||||||||    
T  3982397 aacatttccctttaaaa 3982413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 38748794 - 38748684
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||| ||||| | ||||| |||||| |||||||||||| || ||||||||| |||||||||||||||||||| | || | |||| |||    
T  38748794 aaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttactaattaaagtgcttaaagagtgc-ctgggggcactcgtt 38748696  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  38748695 aacatttccctt 38748684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39150615 - 39150698
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    |||||||||||||||||||||| | |||||||||||| | || |||||||||||| ||||||| ||||||||||||||||||||    
T  39150615 aaaaagtcaactattacaatttacaatgcattcaatacataaattttcattaaaatcttactagttaaagtgcttaaagagtgc 39150698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 31889196 - 31889302
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaactttt-cattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||| |||||  ||||||| |||| ||||||||| |||||||||||||| ||||||| |||||||||||||| |  || ||||| |||    
T  31889196 aaaagtcaactattacgatttctaatgcatttaatacacaactttttcattaaaaacttaccatttaaaatgcttaaagagtgcactagaaacactcgtt 31889295  T
Q  101 aacattt 107  Q
    |||||||    
T  31889296 aacattt 31889302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 45640580 - 45640688
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||| ||||| ||||| | ||||||||| || |||| ||||||| |||||||||||||||||| |||||||||||||   ||| |||||| |||    
T  45640580 aaaaagtcaattattataattttcaatgcattcattacacaa-ttttcatcaaaaacttactatttaaaatgcttaaagagtgtctcggggacactcgtt 45640678  T
Q  101 aacatttccc 110  Q
    ||||||||||    
T  45640679 aacatttccc 45640688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 47187894 - 47187812
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||| |||||||||| ||||||| |||||||||||| | || |||||||||||||||||| |||| ||||| ||||||||||    
T  47187894 aaaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttaccattttaagtgtttaaagagtg 47187812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40460796 - 40460725
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtg 72  Q
    ||||| |||| ||||||| ||||| ||  ||||||||||||| |||||||||||||||||||||||||||||    
T  40460796 aaaaaatcaattattacagtttccaatttattcaatatacaatttttcattaaaaacttactatttaaagtg 40460725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44329629 - 44329739
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||| ||||| | |||||||||||| | || |||| | ||||||||| |||||||||||| ||||||| ||    ||| ||||| |||    
T  44329629 aaaaagtcaactattataattttcaatgcattcaatacataattttttactaaaaactttctatttaaagtgtttaaagaatgtcgtggaaacactcgtt 44329728  T
Q  101 aacatttccct 111  Q
    |||||||||||    
T  44329729 aacatttccct 44329739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4851318 - 4851237
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagt 82  Q
    |||||||||||||||||||||||  ||||| | | ||  ||||||||||| || ||||||||| ||||||||||||||||||    
T  4851318 aaaaagtcaactattacaatttcaaatgcacttactacccaacttttcataaagaacttactaattaaagtgcttaaagagt 4851237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 39156294 - 39156408
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaa----cttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacact 96  Q
    ||||||||||||| |||||||||| |||||||||||| ||||     |||| |||||||| |||| |||||||||| ||||| ||||||| | |||| ||    
T  39156294 aaaaagtcaactactacaatttccaatgcattcaatacacaattttttttttattaaaaatttaccatttaaagtgtttaaaaagtgctctgaagactct 39156393  T
Q  97 tgttaacatttccct 111  Q
     |||||||| |||||    
T  39156394 cgttaacatgtccct 39156408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 44829305 - 44829417
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||| |||||||||||||||||   || ||||||||| ||||||||| ||| |||||||||   ||||||| |||||||||||  ||||| ||||| |||    
T  44829305 aaaaggtcaactattacaatttttaatacattcaatacacaactttttatt-aaaacttaccgattaaagtacttaaagagtgtcccggaaacactcgtt 44829403  T
Q  101 aacatttcccttta 114  Q
    || |||||||||||    
T  44829404 aatatttcccttta 44829417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 7750464 - 7750582
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||| | || |||||||| ||||||| | |||| |||||||||  ||||| ||||  |||||||   ||||||||||  |||||| |||| |||    
T  7750464 aaaaagtcaaatgtttcaatttccaatgcattaattatataacttttcaa-aaaaagttaccttttaaaggttttaaagagtgacccggaggcactcgtt 7750562  T
Q  101 aacatttccctttaaaaaat 120  Q
    ||||||||||||||||||||    
T  7750563 aacatttccctttaaaaaat 7750582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8794449 - 8794562
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcat--taaaaacttactatttaaagtgcttaaagagtgctccggagacacttg 98  Q
    |||||||||||||||| ||||| | ||||| || ||| ||||||||| ||   ||||| |||||| ||||||| |||||||| |||| | |||||||| |    
T  8794449 aaaaagtcaactattataattttcaatgcactccatacacaactttttataaaaaaaatttactaattaaagtacttaaagattgct-ctgagacactcg 8794547  T
Q  99 ttaacatttcccttt 113  Q
    |||||||||||||||    
T  8794548 ttaacatttcccttt 8794562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38491254 - 38491309
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaa 56  Q
    |||||||||||||||||||||| | |||||||||||| |||| |||||||||||||    
T  38491254 aaaaagtcaactattacaatttacaatgcattcaatacacaatttttcattaaaaa 38491309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 34409773 - 34409874
Alignment:
Q  7 tcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatt 106  Q
    |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||| ||||||||||| |||||| ||  || ||  |||| |||||||||    
T  34409773 tcaattattataatttccaatgcattcaatacacat-ttttcattaaaaacttaccatttaaagtgcataaagaatgtcccagaagcactcgttaacatt 34409871  T
Q  107 tcc 109  Q
    |||    
T  34409872 tcc 34409874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44329497 - 44329579
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||| ||||| ||||| |  |||||| |||||| ||||||| |||||||| ||  ||||||||||||||||||||||    
T  44329497 aaaaagtcaattattataattttcagtgcatttaatatataactttttattaaaaattttatatttaaagtgcttaaagagtg 44329579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 27585259 - 27585211
Alignment:
Q  71 tgcttaaagagtgctccggagacacttgttaacatttccctttaaaaaa 119  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  27585259 tgcttaaagagtgctctggagacactcgttaacattcccctttaaaaaa 27585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34232780 - 34232673
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaact-tactatttaaagtgcttaaagagtgctccggagacacttgt 99  Q
    |||||||||||||||||||||| | |||| ||||||| ||||||     ||||||| |  ||||||||| |||||||||||||| ||||  | |||| ||    
T  34232780 aaaaagtcaactattacaattttcaatgctttcaatacacaact-----ttaaaaagtcaactatttaaggtgcttaaagagtgttccgagggcactcgt 34232686  T
Q  100 taacatttccctt 112  Q
    |||||||||||||    
T  34232685 taacatttccctt 34232673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 30822799 - 30822741
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccc 110  Q
    |||||| |||| |||||||||||||||||| || ||||| ||||||||||||||||||||    
T  30822799 taaaaatttaccatttaaagtgcttaaagattg-tccggggacacttgttaacatttccc 30822741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 39914678 - 39914576
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | ||||| |||||| ||   |||| || |||||| ||||| |||||||||||||| | | ||||| || |||| |||    
T  39914678 aaaaagtcaactattacaattttcaatgcactcaatacac---ttttaataaaaaacctactaattaaagtgcttaaataatactccgaaggcactcgtt 39914582  T
Q  101 aacatt 106  Q
    ||||||    
T  39914581 aacatt 39914576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48022426 - 48022351
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgctta 76  Q
    ||||||| ||||||| |||||| | |||||||||||| | |  |||| ||||||||||||||||||||| ||||||    
T  48022426 aaaaagttaactattgcaattttcaatgcattcaatacatatttttttattaaaaacttactatttaaaatgctta 48022351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7212806 - 7212883
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||||| ||| |||||||||||| ||||||||     ||||||||| ||| ||||||||| |||||||||| ||||||||||    
T  7212806 aaaaagttaacaattacaatttccaatgcattc-----acaactttttatttaaaacttacaatttaaagtgtttaaagagtg 7212883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 8454341 - 8454283
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttcc 109  Q
    |||||| |||| ||||||||  |||||| | ||||||||||||||||||||||||||||    
T  8454341 taaaaaattaccatttaaaggtcttaaaaattgctccggagacacttgttaacatttcc 8454283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 6883201 - 6883120
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagt 82  Q
    ||||| |||||||||||||||||  ||||||||| || | ||||||||||  |||| |||  |||||||||| |||||||||    
T  6883201 aaaaaatcaactattacaatttcaaatgcattcattacataacttttcatataaaatttatcatttaaagtgtttaaagagt 6883120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32562426 - 32562350
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    ||||| |||||||||||||||| | ||||| | |||| |||| |||| || ||||||||||||||||||||| |||||    
T  32562426 aaaaattcaactattacaattttcaatgcagtgaatacacaattttttat-aaaaacttactatttaaagtgtttaaa 32562350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8365536 - 8365603
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaa 68  Q
    ||||| |||||||||||||| | | |||||||||||| |  | |||||| ||||||||||||||||||    
T  8365536 aaaaaatcaactattacaatcttcaatgcattcaatacatcatttttcaataaaaacttactatttaa 8365603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 14746273 - 14746162
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| |||||| ||| ||||| | ||||  | |||| ||||||||||||  | ||||||||| ||||||||||| ||||||||  ||| | |||| |||    
T  14746273 aaaaaatcaactgttataattttcaatgctatgaatacacaacttttcatatagaacttactaattaaagtgcttgaagagtgcctcgggggcactcgtt 14746174  T
Q  101 aacatttccctt 112  Q
    ||||||| ||||    
T  14746173 aacattttcctt 14746162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 14758608 - 14758701
Alignment:
Q  17 caatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggaga-cacttgttaacatttccct 111  Q
    |||||| ||||||||| |||  |||| ||||||| ||||| |||||||||||||| ||||||||||| |||  ||| |||| ||||||||||||||    
T  14758608 caattttcgatgcattgaatgcacaatttttcat-aaaaatttactatttaaagtccttaaagagtg-tccttagagcactcgttaacatttccct 14758701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 18433018 - 18432947
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaaga 80  Q
    |||| |||||||||   ||| |||||||||||||||||||||||| || ||| ||||||||  |||||||||    
T  18433018 aactgttacaatttttaatgtattcaatatacaacttttcattaagaatttaatatttaaacggcttaaaga 18432947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 36622037 - 36622076
Alignment:
Q  73 cttaaagagtgctccggagacacttgttaacatttccctt 112  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  36622037 cttaaagagtgctccggagacactcgctaacatttccctt 36622076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 46087178 - 46087235
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    |||||||||  |||| || ||||||||||||||||||||   ||||||||||||||||    
T  46087178 taaaaacttgttattaaaggtgcttaaagagtgctccgggagcacttgttaacatttc 46087235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17552866 - 17552946
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagag 81  Q
    |||||||||||||||| |||||   ||| ||| ||||||||| ||||  ||||||||| ||  |||||||| |||||||||    
T  17552866 aaaaagtcaactattataatttttaatgtatttaatatacaattttttgttaaaaactgaccttttaaagtacttaaagag 17552946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 36563737 - 36563814
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaaga 80  Q
    |||| ||||||||||| ||||| | ||||||| |||| |||| ||||||| ||||||||   |||||||||| |||||||    
T  36563737 aaaacgtcaactattataattttcaatgcattaaatacacaatttttcataaaaaactt--catttaaagtgtttaaaga 36563814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 32823711 - 32823823
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtta 101  Q
    ||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||    
T  32823711 aaaagtcaattattacaattttcaatgcattcaatacacaacttttcattaaaaacttgttatttaaagtgcttaaagagtgctccggaggcactcgtta 32823810  T
Q  102 acatttcccttta 114  Q
    |||||||||||||    
T  32823811 acatttcccttta 32823823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 31855087 - 31855198
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||| | |||  ||||    
T  31855087 aaaaagtcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaagagtatcccgaatacatatgtt 31855186  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  31855187 aacatttccctt 31855198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 17215756 - 17215650
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | |||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| || |||| |||    
T  17215756 aaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaagtgcttaaagagtgatccgaaggcactcgtt 17215657  T
Q  101 aacattt 107  Q
    |||||||    
T  17215656 aacattt 17215650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 19293526 - 19293416
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||||| |||||| ||||| |||||||||||||||||  | |||  ||||||  ||    
T  19293526 aaaaagttaactattacaatttccgatgcactcaataaccaacttttcataaaaaacctactaattaaagtgcttaaagagatccccgaggacactcatt 19293427  T
Q  101 aacatttccct 111  Q
    |||||||||||    
T  19293426 aacatttccct 19293416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7421705 - 7421787
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||| ||||||||||| | ||||||| |||| ||||||||| | |||||  ||||||||||||||||||||||||||    
T  7421705 aaaaagtcaaatattacaattttcaatgcatttaatacacaactttttaataaaactttactatttaaagtgcttaaagagtg 7421787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1841016 - 1841084
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaa 69  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||  |||||||    
T  1841016 aaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaacttatcatttaaa 1841084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 30801785 - 30801853
Alignment:
Q  12 tattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaaga 80  Q
    ||||| ||||| | |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  30801785 tattataattttcaatgcattcaatacacaacttttaattaaaaacttgctatttaaagtgcttaaaga 30801853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 28874433 - 28874538
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtta 101  Q
    |||| |||||||||| ||||||| |||||||||||| | || ||||||||||||||||  |||||||| || ||||||| |   |||||| |||| ||||    
T  28874433 aaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaagaatatcccggaggcactcgtta 28874532  T
Q  102 acattt 107  Q
    ||||||    
T  28874533 acattt 28874538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9762835 - 9762939
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttca-ttaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgt 99  Q
    |||||||||| ||||| ||||||  || |||||| || ||||||||||| ||||||| |||| |||||||||| ||||||||||| |||||| |||| ||    
T  9762835 aaaaagtcaattattataatttctaatacattcagtacacaacttttcatttaaaaatttaccatttaaagtgattaaagagtgc-ccggag-cactcgt 9762932  T
Q  100 taacatt 106  Q
    |||||||    
T  9762933 taacatt 9762939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 27778788 - 27778891
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||||||| |||| ||||| | |||||||||||| |||  ||||||| ||||| |||| ||||||||||||||||||||||| |||| ||||  |||    
T  27778788 aaaaagtcaacgattataattttcaatgcattcaatacacat-ttttcat-aaaaatttaccatttaaagtgcttaaagagtgct-cggaaacacacgtt 27778884  T
Q  101 aacattt 107  Q
    |||||||    
T  27778885 aacattt 27778891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2692503 - 2692427
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    |||||||||||||||||||||||| ||| | | |||| ||||||||| ||| |||| ||||||||||||||| |||||    
T  2692503 aaaaagtcaactattacaatttccaatgaagtgaatacacaactttttatt-aaaatttactatttaaagtgtttaaa 2692427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 30739632 - 30739740
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||| ||||  ||| |||||| |||||||||||| |||| ||||||||||||| |||  |||| || |||||||| |||| |||   |||||| |||    
T  30739632 aaaaagttaactggtacgatttccaatgcattcaatacacaatttttcattaaaaatttatcattttaaatgcttaaaaagtggtccatggacactcgtt 30739731  T
Q  101 aacatttcc 109  Q
    |||||||||    
T  30739732 aacatttcc 30739740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 5446731 - 5446626
Alignment:
Q  5 agtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaaca 104  Q
    |||||||| ||||||||| | |||||||||||  || |||||| |||||||| || ||||||||||||| |  |||||| ||||| | |||| |||||||    
T  5446731 agtcaactgttacaattttcaatgcattcaatgcaccacttttaattaaaaaattgctatttaaagtgc-tcgagagtg-tccgggggcactcgttaaca 5446634  T
Q  105 tttccctt 112  Q
    ||||||||    
T  5446633 tttccctt 5446626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 23399195 - 23399250
Alignment:
Q  53 aaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    |||||||| |||||||||| ||||||||||| | |||||||||| |||||||||||    
T  23399195 aaaacttaatatttaaagtacttaaagagtgtttcggagacactcgttaacatttc 23399250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 18737797 - 18737884
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaa-aacttactatttaaagtgcttaaagagtgctccgg 89  Q
    |||| |||| ||||||||||| | ||||||| |||| |||| |||| || ||| ||||||| |||||||||| ||||||||||||||||    
T  18737797 aaaaatcaattattacaattttcaatgcattaaata-acaattttttataaaataacttacaatttaaagtgtttaaagagtgctccgg 18737884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1479165 - 1479083
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    |||||| ||| ||| ||||||| | ||||||| |||| |||| ||| ||| ||||| |||| ||||||||||||||||||||||    
T  1479165 aaaaaggcaattatgacaattttcaatgcattgaatacacaattttacat-aaaaatttaccatttaaagtgcttaaagagtgc 1479083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 2864917 - 2864992
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcat-taaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||||| | ||||||| |||| |||| |||||||  |||||||||| ||||||| || ||||||||||    
T  2864917 aactattacaatttacaatgcattaaatacacaatttttcatcaaaaaacttaccatttaaaatgtttaaagagtg 2864992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26669352 - 26669291
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttact 62  Q
    |||||||||||||||||||||| |  || ||| |||| | |||||||||||||||| |||||    
T  26669352 aaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttact 26669291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 2884128 - 2884234
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcat---taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacat 105  Q
    |||||||||||||| | ||||||| |||| |||| |||||||    |||||||||| ||||||| || ||||||||||    || | |||| ||||||||    
T  2884128 aactattacaatttacaatgcattaaatacacaatttttcataaaaaaaaacttaccatttaaaatgtttaaagagtgtcttgggggcactagttaacat 2884227  T
Q  106 ttccctt 112  Q
    |||||||    
T  2884228 ttccctt 2884234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 27843217 - 27843169
Alignment:
Q  64 tttaaagtgcttaaagagtgctccggagacacttgttaacatttccctt 112  Q
    |||||||  |||||||||||| | |||| ||||||||||||||||||||    
T  27843217 tttaaagatcttaaagagtgccctggaggcacttgttaacatttccctt 27843169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 34530406 - 34530346
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccct 111  Q
    ||||||| |||||||||||||||||||||| |||||    | |||| ||||||||||||||    
T  34530406 taaaaacatactatttaaagtgcttaaagaatgctcttagggcactcgttaacatttccct 34530346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1334957 - 1334851
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||| |||| | |||    
T  1334957 aaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatcatttaaagtgcttaaagagtgctccggggacaatcgtt 1334858  T
Q  101 aacattt 107  Q
    |||||||    
T  1334857 aacattt 1334851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19890262 - 19890183
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaaga 80  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||    
T  19890262 aaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaacttattattttaagtgcttaaaga 19890183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31452419 - 31452313
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||||||| |||||||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||| | || |||||  ||||| |||    
T  31452419 aaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatttaaagtgcttaaataatgttccgggaacactcgtt 31452321  T
Q  101 aacatttc 108  Q
    ||||||||    
T  31452320 aacatttc 31452313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41933164 - 41933270
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | ||||| ||| || ||||||||| || ||||| |||||| |||||||||||||||||||||||||  ||||| |||    
T  41933164 aaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttactaattaaagtgcttaaagagtgctccgggaacactcgtt 41933263  T
Q  101 aacattt 107  Q
    || ||||    
T  41933264 aatattt 41933270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 15505577 - 15505693
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||| |||||||| ||||| | || ||||||||| |||||||||||||  ||||||||||||||||||| || ||||||||  | |||||||| |||    
T  15505577 aaaaagtaaactattataattttcaatacattcaatacacaacttttcattccaaacttactatttaaagtgtttcaagagtgccacagagacactcgtt 15505676  T
Q  101 aacatttccctttaaaa 117  Q
    ||||||| ||| |||||    
T  15505677 aacattttcctataaaa 15505693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 9449026 - 9448944
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    |||| |||||||||| ||||| | || ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  9449026 aaaaatcaactattataattttcaatacattcaatacacaacttttcattaaaaacttaccatttaaagtgtttaaagagtgc 9448944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29239322 - 29239240
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||||||||||||| | |||||||||||| || | ||||||||||| | |||||| |||||||||||||||||||    
T  29239322 aaaaagtcaactattacaattttcaatgcattcaatacaccatttttcattaaagatttactaattaaagtgcttaaagagtg 29239240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 19514905 - 19514987
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    ||||||||||||||| ||||  | ||||| | |||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  19514905 aaaagtcaactattataattatcaatgcaatgaatatacaacttttcatataaaacttacaatttaaagtgcttaaagagtgc 19514987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 31017381 - 31017275
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||| ||||  ||||| | ||||||| |||| |||||||||||||||||||||   |||||||||||||||||| ||| ||| || |||| |||    
T  31017381 aaaaagtcaaatattttaattttcaatgcatttaatacacaacttttcattaaaaacttttcatttaaagtgcttaaagaatgccccgaaggcactcgtt 31017282  T
Q  101 aacattt 107  Q
    |||||||    
T  31017281 aacattt 31017275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 34904861 - 34904755
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| ||||||||||||||||   ||| ||| |||| | || |||||||||| ||||||| ||||||||||||||||||||||||||||  |||| |||    
T  34904861 aaaaaatcaactattacaatttttaatgaatttaatacaaaatttttcattaataacttacaatttaaagtgcttaaagagtgctccggaagcactcgtt 34904762  T
Q  101 aacattt 107  Q
     ||||||    
T  34904761 gacattt 34904755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 4762384 - 4762465
Alignment:
Q  3 aaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    |||||||||||||| ||||| | |||||||||||| |||| |||| |||||||| ||||||||||||||| ||||| |||||    
T  4762384 aaagtcaactattataattttcaatgcattcaatacacaattttttattaaaaatttactatttaaagtgattaaaaagtgc 4762465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 37993111 - 37993220
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| |||||||||||||||| | ||||||| |||| | || |||| |||||||| |||||||||||| || ||||||| |||| | ||||||||  ||    
T  37993111 aaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaaatgtttaaagaatgcttcagagacactcttt 37993210  T
Q  101 aacatttccc 110  Q
    ||||||||||    
T  37993211 aacatttccc 37993220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 20064944 - 20065020
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    |||||||||||||||||||||| | ||| ||| |||| |||| |||||| ||||| ||| ||||||||||||||||||    
T  20064944 aaaaagtcaactattacaattttcaatgtattaaatacacaatttttca-taaaacctttctatttaaagtgcttaaa 20065020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42966990 - 42967102
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||| || |||| ||||| |||||||||| | || | || ||||||  ||||| |||||||||||||  |||||||||||| |||||  |||  |||    
T  42966990 aaaaagttaaatatttcaattcccgatgcattgattacataaattttcaaaaaaaaattactatttaaaggtcttaaagagtgccccggatgcaccggtt 42967089  T
Q  101 aacatttcccttt 113  Q
    |||||||||||||    
T  42967090 aacatttcccttt 42967102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 3655788 - 3655706
Alignment:
Q  32 tcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttcccttta 114  Q
    |||||| |||||||||||| || ||||||||| ||||||||   | ||||||| |||| | |||| |||||||||||||||||    
T  3655788 tcaatacacaacttttcataaagaacttactaattaaagtgtgaagagagtgccccgggggcactcgttaacatttcccttta 3655706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 38533938 - 38533864
Alignment:
Q  5 agtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaag 79  Q
    |||||||||||  ||||||  |||||||||||| |||| ||||| ||| ||||||||||||| || |||||||||    
T  38533938 agtcaactattgtaatttctaatgcattcaatacacaatttttctttacaaacttactatttcaaatgcttaaag 38533864  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 21431133 - 21431194
Alignment:
Q  45 tttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatt 106  Q
    |||||||||||||| || |||||||| |||||||| || ||||||| ||||| |||||||||    
T  21431133 tttcattaaaaactcacaatttaaagagcttaaagggtactccggaaacactcgttaacatt 21431194  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9173780 - 9173697
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattc-aatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||| |||||||||||||||| | || || || |||| |||| ||||||| |||||||| ||| |||||||| ||||||||||    
T  9173780 aaaaaatcaactattacaattttcaatacaatcaaatacacaatttttcataaaaaacttgctaattaaagtgtttaaagagtg 9173697  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11944946 - 11944888
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaactta 60  Q
    |||| ||||||||||||||||| | ||||||| |||| ||||||||||| ||||||||||    
T  11944946 aaaatgtcaactattacaattttcaatgcattgaatacacaacttttca-taaaaactta 11944888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 14663250 - 14663140
Alignment:
Q  4 aagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaac 103  Q
    ||||||| || | |||||||| || |||| |||  |||| ||||  ||||||| ||| |||||||    ||||||||||||  ||||||||||| |||||    
T  14663250 aagtcaaatagttcaatttccaatacattaaatgcacaaattttttttaaaaaattattatttaagacccttaaagagtgcctcggagacacttattaac 14663151  T
Q  104 atttcccttta 114  Q
    |||||||||||    
T  14663150 atttcccttta 14663140  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 38533415 - 38533341
Alignment:
Q  5 agtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaag 79  Q
    |||||||||||  ||||||  |||||||||||| |||| ||||| ||| ||| ||||||||| || |||||||||    
T  38533415 agtcaactattgtaatttctaatgcattcaatacacaatttttctttacaaaattactatttcaaatgcttaaag 38533341  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 40347987 - 40347915
Alignment:
Q  34 aatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacattt 107  Q
    |||| |||| ||||||| ||||| ||||||||| |||  |||||| ||||||||| || |||||||||||||||    
T  40347987 aatacacaaattttcataaaaaa-ttactattttaagctcttaaatagtgctccgaaggcacttgttaacattt 40347915  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 815078 - 815137
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccct 111  Q
    |||||||||||| || || |||||||| |||||| || |||||||| ||||||||||||||    
T  815078 taaaaacttacttttaaaggtgcttaa-gagtgccccagagacactcgttaacatttccct 815137  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 35443516 - 35443460
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacattt 107  Q
    ||||||||||| ||| ||||| ||||||||||| ||| ||| |||| ||||||||||    
T  35443516 taaaaacttacgattaaaagtacttaaagagtgttccagaggcactcgttaacattt 35443460  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 42636439 - 42636330
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||   |||| |||    
T  42636439 aaaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtgcttaaagagtgctccgggagcactcgtt 42636340  T
Q  101 aacatttccc 110  Q
    ||||||||||    
T  42636339 aacatttccc 42636330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1135194 - 1135302
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |  | |||| |||    
T  1135194 aaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaaagtgtttaaagagtgctctgacggcactcgtt 1135293  T
Q  101 aacatttcc 109  Q
    |||||||||    
T  1135294 aacatttcc 1135302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28207657 - 28207778
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaa-gtgcttaaagagtgctccggagacacttgt 99  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||| |  || || ||| ||    
T  28207657 aaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaactttccatttaaaggtgcttaaagagtg-taaggggatactcgt 28207755  T
Q  100 taacatttccctttaaaaaatta 122  Q
    ||||||||||||| | |||||||    
T  28207756 taacatttcccttaataaaatta 28207778  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27801299 - 27801218
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagt 82  Q
    |||||||||||||||||||||| | ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||    
T  27801299 aaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaaagagt 27801218  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33013078 - 33013184
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| ||| | |||||| |||||||||||| || ||||||||| |||||||||||||||||||| | |||| |||| |||    
T  33013078 aaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttactaattaaagtgcttaaagagtgcccaggag-cactcgtt 33013176  T
Q  101 aacatttc 108  Q
    ||||||||    
T  33013177 aacatttc 33013184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1369932 - 1369824
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||| ||||||||| |||||||||||| | ||||||||||  |||||||| || |||||||||||||||||||  | |||  ||||||||    
T  1369932 aaaaagtcaactatcacaatttccaatgcattcaatagataacttttcatataaaacttattaattaaagtgcttaaagagtgtccaggaagcacttgtt 1369833  T
Q  101 aacatttcc 109  Q
    |||||||||    
T  1369832 aacatttcc 1369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37427224 - 37427333
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| |||| ||||||||||| | ||| | ||||||  |||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||| |||    
T  37427224 aaaaaatcaattattacaattttcaatgtaatcaatactcaacttttcattaaaatcttaccatttaaagtgcttaaagagtg-tccggaggcactcgtt 37427322  T
Q  101 aacatttccct 111  Q
    |||||||||||    
T  37427323 aacatttccct 37427333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 35901964 - 35902041
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    |||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| ||||||||    
T  35901964 aaaaagtcaattattacaatttccaatgcattcaatacagaacttttcattaaaaacttattatttaaaatgcttaaa 35902041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 4384208 - 4384099
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggag-acacttgt 99  Q
    ||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||| |||  ||||||||||||||||||||| ||| ||| ||||| ||    
T  4384208 aaaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaatttatcatttaaagtgcttaaagagtg-tcccgagaacactcgt 4384111  T
Q  100 taacatttccct 111  Q
    |||| |||||||    
T  4384110 taacgtttccct 4384099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12829944 - 12829824
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||| | ||||||||||  | |||||||||||||| || |||||||||||||||||| |||||||||||||||| |||| |  |||| |||| |||    
T  12829944 aaaaagtctattattacaattaacaatgcattcaatatataatttttcattaaaaacttaccatttaaagtgcttaaa-agtgtttgggag-cactcgtt 12829847  T
Q  101 aacatttccctttaaaaaattaa 123  Q
    |||||||||||| || |||||||    
T  12829846 aacatttcccttcaataaattaa 12829824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33949623 - 33949508
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| |||||||||||||||||  ||||| |||||| |||||||||||| || ||||||||| |||||||| |||||||||| ||  | | ||||||||    
T  33949623 aaaaattcaactattacaatttcaaatgcactcaatacacaacttttcataaataacttactaattaaagtgtttaaagagtg-tctcggggcacttgtt 33949525  T
Q  101 aacatttccctttaaaa 117  Q
    || ||||||| ||||||    
T  33949524 aatatttcccattaaaa 33949508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 26750608 - 26750695
Alignment:
Q  26 atgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttcccttt 113  Q
    |||||||||||  | || |||||||||||| ||||||||||||||||||||||||||||||||    |||| ||||||||||||||||    
T  26750608 atgcattcaatgcataatttttcattaaaatcttactatttaaagtgcttaaagagtgctccgagcgcactcgttaacatttcccttt 26750695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3146069 - 3146155
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattca----atatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||||| |||||||||||||||| |||||||||    ||  ||| | |||||||||||||||||||||||||||||||||||||||    
T  3146069 aaaaagttaactattacaatttccaatgcattcattcaatgcacaccgtttcattaaaaacttactatttaaagtgcttaaagagtg 3146155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 36356022 - 36355948
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||||| |||||||  ||||||| |||| ||||||||||||||||||||||| ||||||||| |||||| ||||    
T  36356022 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtg 36355948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24695780 - 24695856
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    |||||||||||||||||||||||  ||||| | |||| ||||||||| ||| |||||||||||||||||||| |||||    
T  24695780 aaaaagtcaactattacaatttctaatgcagtgaatacacaactttttatt-aaaacttactatttaaagtgtttaaa 24695856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 24733254 - 24733315
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctt 112  Q
    ||||||||||||||| || || |||||||||||| ||||||||||| |||||||||||||||    
T  24733254 taaaaacttactattaaaggtacttaaagagtgccccggagacactcgttaacatttccctt 24733315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33067535 - 33067603
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaa 69  Q
    |||||||||| ||||||||| ||  |||||||||||| | ||||||||||| |||||||||||||||||    
T  33067535 aaaaagtcaattattacaatgtctaatgcattcaatacaaaacttttcatttaaaacttactatttaaa 33067603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 12684561 - 12684490
Alignment:
Q  7 tcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    |||||||||||||||||  ||||||||| || | ||||||| |||||||| ||| |||||||||||||||||    
T  12684561 tcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttattatttaaagtgcttaaa 12684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 884450 - 884531
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||| |||| ||||||||||| | ||| ||| |||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  884450 aaaaaatcaattattacaattttcaatg-atttaatacacaatttttcattaaaaactttcaatttaaagtgcttaaagagtg 884531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37813475 - 37813410
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaa 69  Q
    ||||||||||| |||||||||||| ||||||| |||| ||||||||||||   ||||||||||||||||    
T  37813475 aaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcat---aaacttactatttaaa 37813410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 45197410 - 45197519
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||||||| ||| |||||| | ||| ||| | ||  ||||||||||| ||||| ||||||||||| ||| ||||||||||  | |||| |||| |||    
T  45197410 aaaaagtcaacaattgcaattttcaatggattgattacccaacttttcataaaaaatttactatttaatgtgtttaaagagtgtcctggaggcactcgtt 45197509  T
Q  101 aacatttccc 110  Q
    ||||||||||    
T  45197510 aacatttccc 45197519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 2258152 - 2258085
Alignment:
Q  13 attacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaaga 80  Q
    ||||||||||   ||| ||| |||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  2258152 attacaatttttaatgtatttaatacacaacttttcatttaaaacttaccatttaaagtgcttaaaga 2258085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 39691187 - 39691078
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||| || | |||||| | ||||||| |||| |||| ||||||| ||||| |||||||||||  | |||||||| | | |||||||||||||||    
T  39691187 aaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaaaaa-ttactatttaagatccttaaagaatac-ccggagacacttgtt 39691090  T
Q  101 aacatttccctt 112  Q
    ||||||| ||||    
T  39691089 aacattttcctt 39691078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 167917 - 167856
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttact 62  Q
    |||||||||||||||| ||||||| ||||||| | || | ||||||||||| ||||||||||    
T  167917 aaaaagtcaactattataatttccaatgcatttattacataacttttcatttaaaacttact 167856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 32133719 - 32133655
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctttaa 115  Q
    |||||| |||||||||||| | |||||  |||||||||| | |||| ||||||||||||||||||    
T  32133719 taaaaaattactatttaaattccttaaccagtgctccgggggcactagttaacatttccctttaa 32133655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3520881 - 3520822
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaactta 60  Q
    ||||| |||||||||||| |||   |||||||||||| | ||||||||||||||||||||    
T  3520881 aaaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaactta 3520822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 31265046 - 31265144
Alignment:
Q  17 caatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctttaaa 116  Q
    |||||||| ||| ||| |||| |||| ||||||| ||||| ||||||||| | |  |||||||||||| ||||   |||| |||||||||||||||||||    
T  31265046 caatttccaatgtattaaatacacaagttttcat-aaaaagttactattttaggctcttaaagagtgccccgggagcactcgttaacatttccctttaaa 31265144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 44960545 - 44960603
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttcc 109  Q
    |||||| |||||||| |||||||||||||||||| | |||||  ||||||||| |||||    
T  44960545 taaaaatttactattaaaagtgcttaaagagtgccctggagatgcttgttaacgtttcc 44960603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 14237177 - 14237245
Alignment:
Q  17 caatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctc 86  Q
    |||||||||||||||| |||  |||| ||| ||| ||||| |||||||||||||| |||||||| |||||    
T  14237177 caatttccgatgcattaaatgcacaattttccat-aaaaatttactatttaaagtccttaaagaatgctc 14237245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 41429652 - 41429571
Alignment:
Q  26 atgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacattt 107  Q
    ||||||| |||| |||| ||||||| || || ||| |||||||| ||||||||||||| | ||||  |||| ||||||||||    
T  41429652 atgcattgaatacacaatttttcataaacaaattaatatttaaattgcttaaagagtgatacggaagcactcgttaacattt 41429571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 7691373 - 7691333
Alignment:
Q  64 tttaaagtgcttaaagagtgctccggagacacttgttaaca 104  Q
    |||||| ||||||||||||||||| |||||||| |||||||    
T  7691373 tttaaaatgcttaaagagtgctcccgagacactcgttaaca 7691333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30104837 - 30104946
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||| | |||| |||    
T  30104837 aaaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttaccacttaaagtgtttaaagagtgctccgggggcactagtt 30104936  T
Q  101 aacatttccc 110  Q
    ||||||||||    
T  30104937 aacatttccc 30104946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 16667365 - 16667257
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||| ||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||    
T  16667365 aaaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaaaagtgttctggagacactcgtt 16667266  T
Q  101 aacatttcc 109  Q
    |||||||||    
T  16667265 aacatttcc 16667257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 8221155 - 8221271
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||||||||||||||| || | |||||||||||| |||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||||  ||    
T  8221155 aaaaagtcaactattacaactttcaatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaaagaatgctccggagacactcatt 8221254  T
Q  101 aacatttccctttaaaa 117  Q
    ||||||| |||| ||||    
T  8221255 aacattttccttaaaaa 8221271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 18229675 - 18229563
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||| |||||||||||||||| || ||||||||| |||| |||||||||||||||||| |||||||||||||||||||||  |||||  |||| |||    
T  18229675 aaaaagttaactattacaatttccaatacattcaataaacaatttttcattaaaaacttaccatttaaagtgcttaaagagtgtcccggaagcactcgtt 18229576  T
Q  101 aacatttcccttt 113  Q
    |||||||||||||    
T  18229575 aacatttcccttt 18229563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 39558840 - 39558729
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| |||||| ||||||||||| |||||||  ||| || |||||||| ||||||||||||||||||| |||||||  ||||||||| ||||||| |||    
T  39558840 aaaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttactatttaaaatgcttaagaagtgctccgaagacactcgtt 39558741  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  39558740 aacatttccctt 39558729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30501213 - 30501103
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctcc-ggagacacttgt 99  Q
    |||||||||| ||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||  ||||| || || | |||| ||    
T  30501213 aaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaacaagtgccccggggggcactcgt 30501114  T
Q  100 taacatttccc 110  Q
    |||||||||||    
T  30501113 taacatttccc 30501103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30541556 - 30541446
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctcc-ggagacacttgt 99  Q
    |||||||||| ||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||  ||||| || || | |||| ||    
T  30541556 aaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaacaagtgccccggggggcactcgt 30541457  T
Q  100 taacatttccc 110  Q
    |||||||||||    
T  30541456 taacatttccc 30541446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9276653 - 9276573
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagag 81  Q
    ||||| |||||||||| ||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  9276653 aaaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatttaaagtgcttaaagag 9276573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34899209 - 34899098
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||| ||| ||||||||||||  ||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||| | || | |||| |||    
T  34899209 aaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttactatttaaagtgtttaaagagtgccctggtg-cactcgtt 34899111  T
Q  101 aacatttcccttt 113  Q
    |||||||||||||    
T  34899110 aacatttcccttt 34899098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7719237 - 7719319
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||| |||||||||||||||||| ||  |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  7719237 aaaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttattatttaaagtgcttaaaaagtg 7719319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 7968448 - 7968513
Alignment:
Q  26 atgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggag 91  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7968448 atgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgccccggag 7968513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 23117298 - 23117191
Alignment:
Q  3 aaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaa 102  Q
    ||||| ||| |||||||||||| || |||| |||| | || |||||||||||||||||||||||||| || ||||||| |||||| |||||||| |||||    
T  23117298 aaagttaacaattacaatttccaatacatttaatacataatttttcattaaaaacttactatttaaaatgattaaagaatgctccagagacactagttaa 23117199  T
Q  103 catttccc 110  Q
     |||||||    
T  23117198 tatttccc 23117191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17692295 - 17692404
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||| ||||||||| | ||||| | | || ||||||||||||||||||| |||||||| ||||||||||||||| | |||| | |||| |||    
T  17692295 aaaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactattttaagtgcttaaagagtac-ccgggggcactcgtt 17692393  T
Q  101 aacatttccct 111  Q
    |||||||||||    
T  17692394 aacatttccct 17692404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 3140847 - 3140962
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||| | || |||| |||||||||||||| ||| |||||||| ||||||||||| |||||| |||  ||||  |||||  ||    
T  3140847 aaaaagtcaactattacaattttcaattcatttaatatacaactttttatttaaaacttattatttaaagtgtttaaagtgtgtcccgggaacactcatt 3140946  T
Q  101 aacatttccctttaaa 116  Q
    ||||||| || |||||    
T  3140947 aacattttccattaaa 3140962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15720100 - 15720182
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||||||||||||||| ||| | | |||| |||||||||||| || ||||||||| |||||||| ||||||||||    
T  15720100 aaaaagtcaactattacaatttccaatgaacttaatacacaacttttcataaagaacttactaattaaagtgtttaaagagtg 15720182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2918670 - 2918586
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaa-cttactatttaaagtgcttaaagagtgc 84  Q
    |||| ||||||||||| ||||||| ||||||| |||| ||||||||||||||||||  |||| ||||||| ||||||||||||||    
T  2918670 aaaatgtcaactattataatttccaatgcatttaatacacaacttttcattaaaaattttacaatttaaaatgcttaaagagtgc 2918586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 13480060 - 13480162
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg-ctccggagacacttgttaacattt 107  Q
    |||||||| ||||| | |||||||||||| ||||  ||| |||||||| ||| ||||||||||| |||||||||| | ||||| | ||||||||||||||    
T  13480060 aactattataattttcaatgcattcaatacacaatattttattaaaaatttattatttaaagtggttaaagagtgtcaccggaaaaacttgttaacattt 13480159  T
Q  108 ccc 110  Q
    |||    
T  13480160 ccc 13480162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 5815129 - 5815061
Alignment:
Q  16 acaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||||  || |||||||||||||||||    
T  5815129 acaatttccaatacattcaacatacatcttttcattaaaaacttactgctttaagtgcttaaagagtgc 5815061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 8208212 - 8208318
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||| |||||||||||   ||||||||| || | ||||||||||  ||||||||  |||||| ||| ||||||||| |||||||  |||| |||    
T  8208212 aaaaagtcaattattacaatttttaatgcattcattacataacttttcatataaaacttatcatttaatgtgtttaaagagtactccggaagcactcgtt 8208311  T
Q  101 aacattt 107  Q
    |||||||    
T  8208312 aacattt 8208318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 112558 - 112477
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||  |||||||| | ||| ||| |||| |||| ||||||||||||| ||  ||||||||||||||||||||||    
T  112558 aaaagtcaactgatacaattttcaatgtatttaatacacaatttttcattaaaaatttgttatttaaagtgcttaaagagtg 112477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40530508 - 40530445
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactat 64  Q
    ||||||| |||||| ||||||||  || ||||||||| |||||| |||||||||||||||||||    
T  40530508 aaaaagttaactatcacaatttctaattcattcaatacacaactattcattaaaaacttactat 40530445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 14166725 - 14166775
Alignment:
Q  62 tatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctt 112  Q
    |||||||||  |||||||||| |||||||  ||||||||||||||||||||    
T  14166725 tatttaaaggtcttaaagagtactccggaagcacttgttaacatttccctt 14166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8247100 - 8247149
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcat 50  Q
    |||||||||| |||| | |||||||||||||| | |||||||||||||||    
T  8247100 aaaaagtcaaatatttcgatttccgatgcattgattatacaacttttcat 8247149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 14475023 - 14474967
Alignment:
Q  52 aaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    ||||| ||||||||| |||  ||||||||||| ||||||| |||| |||||||||||    
T  14475023 aaaaagttactatttgaaggtcttaaagagtgttccggaggcactagttaacatttc 14474967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 8261141 - 8261251
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||| ||||||||| | ||||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||    
T  8261141 aaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcgtt 8261240  T
Q  101 aacatttccct 111  Q
    |||||||||||    
T  8261241 aacatttccct 8261251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 8274558 - 8274668
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||| ||||||||| | ||||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||    
T  8274558 aaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcgtt 8274657  T
Q  101 aacatttccct 111  Q
    |||||||||||    
T  8274658 aacatttccct 8274668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 50341940 - 50341831
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||| | ||| | |||||||||    
T  50341940 aaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaaagagtaccccgaaaacacttgtt 50341841  T
Q  101 aacatttccc 110  Q
    ||||||||||    
T  50341840 aacatttccc 50341831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 7852609 - 7852508
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    |||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||| |||||    
T  7852609 aactattacaattttcaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgccccggtggcactcgttaatatttc 7852510  T
Q  109 cc 110  Q
    ||    
T  7852509 cc 7852508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 45900220 - 45900103
Alignment:
Q  3 aaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaa 102  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||||   |||||||||| |||||||||||||||||||| || | | |||| |||||    
T  45900220 aaagtcaactatcacaatttccaatgcattcaatacacaacttttcatatgaaacttactaattaaagtgcttaaagagtgcccccggggcactcgttaa 45900121  T
Q  103 catttccctttaaaaaat 120  Q
    ||||||||||| ||||||    
T  45900120 catttcccttttaaaaat 45900103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 7444458 - 7444348
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg-ctccggagacacttgt 99  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||| ||| |||| |||| ||    
T  7444458 aaaaagtcaactattacaattttcaatgcattcaatacacaacttttctttaaaaacttagtatttaaagtgtttaaagagtgtctcgggag-cactcgt 7444360  T
Q  100 taacatttccct 111  Q
    ||||||||||||    
T  7444359 taacatttccct 7444348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8297904 - 8297992
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccgg 89  Q
    |||| ||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  8297904 aaaatgtcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaagattgccccgg 8297992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 51834947 - 51835054
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg-ctccggagacacttgt 99  Q
    |||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||| ||| ||| ||||| ||    
T  51834947 aaaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttactatttaaagtgtttaaagagtgtctcggga-acactcgt 51835045  T
Q  100 taacatttc 108  Q
    |||||||||    
T  51835046 taacatttc 51835054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 35777772 - 35777693
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaaga 80  Q
    ||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  35777772 aaaaagttaactattacaatttctaatgcattcaatacacaacttttcattaaaaacttaccatttaaagtgcttaaaga 35777693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41462082 - 41462187
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||  ||||||| |||| | || |||||||||||||||||||||||||| ||||||||||||||| || || |||| |||    
T  41462082 aaaaagtcaactattacaatttcttatgcatttaatacataatttttcattaaaaacttactatttaaaatgcttaaagagtgct-cgaaggcactcgtt 41462180  T
Q  101 aacattt 107  Q
    |||||||    
T  41462181 aacattt 41462187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 50427023 - 50427105
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    ||||||||||||||||||||||| ||||| |||| | |||||||||||||||||| ||||||||||||||| |||||||||||    
T  50427023 aaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactatttaaagtgtttaaagagtgc 50427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 31429310 - 31429387
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaa 78  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  31429310 aaaaaatcaactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaaa 31429387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 47995810 - 47995699
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg-ctccggagacacttgt 99  Q
    ||||||| || ||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| | ||| || |||||||||    
T  47995810 aaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttacaatttaaagtgcttaaagagagtctcagg-gacacttgt 47995712  T
Q  100 taacatttccctt 112  Q
    |||||||| ||||    
T  47995711 taacattttcctt 47995699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 37138235 - 37138127
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||| ||||||| ||||| |||||| |||||||||||| || ||||| ||| ||||| |||||||||||||  |||||  |||| |||    
T  37138235 aaaaagtcaactattataatttccaatgcactcaatacacaacttttcataaagaactttctaattaaattgcttaaagagtgtcccggaagcactcgtt 37138136  T
Q  101 aacatttcc 109  Q
    |||||||||    
T  37138135 aacatttcc 37138127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 36702817 - 36702921
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||| ||||||||||| | |||||||||||| |||| |||||||||||||||||    |||||||||||||||||||  ||||||  ||| |||    
T  36702817 aaaaagtcaattattacaattttcaatgcattcaatacacaatttttcattaaaaactta----ttaaagtgcttaaagagtgtcccggaggaactcgtt 36702912  T
Q  101 aacatttcc 109  Q
    |||||||||    
T  36702913 aacatttcc 36702921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 24175471 - 24175362
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtta 101  Q
    |||||| ||||||||||||||   ||||||| |||| |||||||||| |  ||||||||| |||||||||||||||||||||| |||  | ||||| |||    
T  24175471 aaaagtaaactattacaattttaaatgcatttaatacacaacttttcgtacaaaacttaccatttaaagtgcttaaagagtgccccgagggcacttctta 24175372  T
Q  102 acatttccct 111  Q
    ||||||||||    
T  24175371 acatttccct 24175362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 23605702 - 23605630
Alignment:
Q  39 acaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccct 111  Q
    ||||||||||||||||||||||| |||||||||||||||| |||   ||||||||||| ||||||||||||||    
T  23605702 acaacttttcattaaaaacttaccatttaaagtgcttaaaaagtatcccggagacactcgttaacatttccct 23605630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 34391778 - 34391699
Alignment:
Q  3 aaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagt 82  Q
    |||||||  ||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||| ||||| |||||||||    
T  34391778 aaagtcagttattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagtgtttaaagagt 34391699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25115336 - 25115228
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgctt-aaagagtgctccggagacacttgt 99  Q
    ||||||| |||||||||||||||| ||||| | |||| ||||||||| | |||||||||||||||||||||| || ||||||||| |||| |||||  ||    
T  25115336 aaaaagttaactattacaatttccaatgcagtgaatacacaacttttta-taaaaacttactatttaaagtgtttaaaagagtgc-ccggggacacacgt 25115239  T
Q  100 taacatttccc 110  Q
    |||||||||||    
T  25115238 taacatttccc 25115228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27953114 - 27953046
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaa 69  Q
    ||||||| |||||||||||||| | |||||||||||| |||||||||| |||||||||||| |||||||    
T  27953114 aaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttaccatttaaa 27953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 53014271 - 53014203
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaa 77  Q
    |||||||||||||||| || ||||||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  53014271 aactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaaagtgcttaa 53014203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 24229718 - 24229637
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||| || ||| ||||||| | ||||||| |||| |||| ||||||||||||||||  ||||||||||||||||||||||    
T  24229718 aaaagtaaattatcacaattttcaatgcatttaatacacaatttttcattaaaaactttttatttaaagtgcttaaagagtg 24229637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49400645 - 49400726
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagt 82  Q
    ||||| |||||||||||||||||| ||| ||| |||| || ||||||||||||||  ||  |||||||||||||||||||||    
T  49400645 aaaaaatcaactattacaatttccaatgtatttaatacacgacttttcattaaaattttgttatttaaagtgcttaaagagt 49400726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31690415 - 31690521
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||| || |||||| | ||||||| |||| |||||||||||| | ||| ||||||||||||||| |||| ||||| ||||  | |||| |||    
T  31690415 aaaaagtcaactgttgcaattttcaatgcattgaatacacaacttttcataagaaatttactatttaaagtgtttaaggagtg-tccgagggcactcgtt 31690513  T
Q  101 aacatttc 108  Q
    ||||||||    
T  31690514 aacatttc 31690521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 13585326 - 13585221
Alignment:
Q  9 aactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    |||| ||||||||| | ||| ||||| || | ||||||||||  ||||||||| ||||||||||||||||||||| || |  |||||| |||||||||||    
T  13585326 aactgttacaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtg-tctgaggacactcgttaacatttc 13585228  T
Q  109 cctttaa 115  Q
    || ||||    
T  13585227 ccattaa 13585221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37440859 - 37440941
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||||||||||||| | |||  ||||||| | || ||||||||| ||| |||| ||||||||| |||||||||||    
T  37440859 aaaaagtcaactattacaattttcaatgtgttcaatacataatttttcattataaatttaccatttaaagtacttaaagagtg 37440941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 49084474 - 49084408
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgca-ttcaatatacaacttttcattaaaaacttactattt 66  Q
    |||||||||||||||||||||| | ||| | ||||||| ||||||||||||||||||||||| ||||    
T  49084474 aaaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttaccattt 49084408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 14031411 - 14031347
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactattt 66  Q
    |||||||||| |||||||| | | |||||||||||||||||||||||||  ||||||||| ||||    
T  14031411 aaaagtcaacaattacaatattcaatgcattcaatatacaacttttcatataaaacttaccattt 14031347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 38949116 - 38949015
Alignment:
Q  17 caatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctttaaa 116  Q
    |||||||||||||||| |||  |||| ||||||| ||||| ||||||||| |||| |||||||||||| |   | ||||| ||||||||||||| | |||    
T  38949116 caatttccgatgcattgaatgcacaatttttcat-aaaaatttactatttcaagtccttaaagagtgcccttaaaacactcgttaacatttcccataaaa 38949018  T
Q  117 aaa 119  Q
    |||    
T  38949017 aaa 38949015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 39767257 - 39767351
Alignment:
Q  18 aatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctt 112  Q
    ||||||| ||||||| | || ||||  ||| || ||||| ||||||||| | || |||||  ||||||||||||||||| |||||||||||||||    
T  39767257 aatttccaatgcattaattacacaaacttttataaaaaaattactatttgaggtccttaaccagtgctccggagacactagttaacatttccctt 39767351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 42222995 - 42223069
Alignment:
Q  8 caactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagt 82  Q
    ||||||||| ||||| | |||||||||||| |||| |||| ||||||||||||| | || |||| ||||||||||    
T  42222995 caactattataattttcaatgcattcaatacacaattttttattaaaaacttaccactttaagtacttaaagagt 42223069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 48337589 - 48337679
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcat-taaaaacttactatttaaagtgcttaaagagtgctccgga 90  Q
    ||||| |||||||||||||||| | ||||||| | ||  ||| |||| ||  |||||||||||||||||| |||||||||||| |||||||    
T  48337589 aaaaaatcaactattacaattttcaatgcattgattactcaattttttataaaaaaacttactatttaaaatgcttaaagagttctccgga 48337679  T

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Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39195800 - 39195739
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttact 62  Q
    |||| ||||||||||||||||| | ||||||| |||| ||||||||||||  ||||||||||    
T  39195800 aaaaggtcaactattacaattttcaatgcattgaatacacaacttttcatataaaacttact 39195739  T

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Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 40252737 - 40252798
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctt 112  Q
    |||||| |||||||||||||| |||||  ||||| ||||||||||| |||||||||| ||||    
T  40252737 taaaaatttactatttaaagtccttaaccagtgccccggagacactcgttaacattttcctt 40252798  T

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Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 20394671 - 20394750
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaac-ttttcattaaaaacttactatttaaagtgcttaaagagt 82  Q
    ||||||| |||||||||||||||| || ||||||  ||||||| |||||||||||||||| | ||||||| || |||||||||    
T  20394671 aaaaagtgaactattacaatttccaatacattca--atacaacattttcattaaaaactt-ccatttaaaatgtttaaagagt 20394750  T

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Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 37060625 - 37060664
Alignment:
Q  44 ttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  37060625 ttttcattaaaaacttaccatttaaagtgcttaaaaagtg 37060664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 43969257 - 43969180
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcat--taaaaacttactatttaaagtgcttaa 77  Q
    |||| |||||||||||||||| | ||||| ||||||||||| |||| ||   |||||||||||| | |||||||||||    
T  43969257 aaaaatcaactattacaattttcaatgcactcaatatacaattttttataaaaaaaacttactaataaaagtgcttaa 43969180  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 27953139 - 27953172
Alignment:
Q  71 tgcttaaagagtgctccggagacacttgttaaca 104  Q
    |||||||||||||||||||||||||| |||||||    
T  27953139 tgcttaaagagtgctccggagacactcgttaaca 27953172  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 32692976 - 32692916
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccct 111  Q
    ||||||||||||||| |  || |||||||||||  |||||| |||| ||||||||||||||    
T  32692976 taaaaacttactattaatggtccttaaagagtgtcccggaggcactcgttaacatttccct 32692916  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 37383808 - 37383768
Alignment:
Q  21 ttccgatgcattcaatatacaacttttcattaaaaacttac 61  Q
    |||| |||||||||||||||||||||| |||||||| ||||    
T  37383808 ttccaatgcattcaatatacaactttttattaaaaatttac 37383768  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41370241 - 41370135
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg-ctccggagacacttgt 99  Q
    ||||||| || |||| |||||| | ||||||| | || |||| ||||||| |||||||||||||| ||||| |||||| |||| |||  |||| ||||||    
T  41370241 aaaaagttaaatatttcaattttcaatgcattgattacacaaattttcat-aaaaacttactattcaaagtccttaaaaagtgcctcgagaga-acttgt 41370144  T
Q  100 taacatttc 108  Q
    |||||||||    
T  41370143 taacatttc 41370135  T

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Target: scaffold0036 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 62598 - 62491
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||||||||||||| |||| | |||||||||||| | || |||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  62598 aaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttactatttaaagtgcttaaagagtaccccggagacactcgtt 62499  T
Q  101 aacatttc 108  Q
    ||||||||    
T  62498 aacatttc 62491  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 48180244 - 48180133
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||||||||||||||||||| |||||||   ||  |||| |||||| ||||||||||||||||||||| | |||||||| |||||||| | | |||    
T  48180244 aaaaagtcaactattacaatttccaatgcattggttacccaacatttcataaaaaacttactatttaaagtgataaaagagtgttccggagatattcgtt 48180145  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  48180144 aacatttccctt 48180133  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 24791529 - 24791638
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaact---tactatttaaagtgcttaaagagtgctccggagacactt 97  Q
    |||||||||||||||||||||| | ||| |||||||| | ||||||||||||||||||   |||||||||||||  |||||||||| || |||| ||||     
T  24791529 aaaaagtcaactattacaattttcaatgtattcaatacataacttttcattaaaaacttagtactatttaaagtatttaaagagtg-tctggaggcactc 24791627  T
Q  98 gttaacatttc 108  Q
    |||||||||||    
T  24791628 gttaacatttc 24791638  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 29083973 - 29083865
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttacta-tttaaagtgcttaaagagtgctccggagacacttgt 99  Q
    ||||||| ||||||||||||||   ||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||   | |||| |||| ||    
T  29083973 aaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattttaaagtgcttaaagagtatcctggaggcactcgt 29083874  T
Q  100 taacatttc 108  Q
    |||||||||    
T  29083873 taacatttc 29083865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 51351321 - 51351392
Alignment:
Q  12 tattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||| ||||||| || |||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||    
T  51351321 tattataatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaaagagtg 51351392  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 46093582 - 46093516
Alignment:
Q  53 aaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctttaaaaaa 119  Q
    ||||||||||||||||||| |||||||||| | |||||| |||| |||||||||| |||||||||||    
T  46093582 aaaacttactatttaaagttcttaaagagtaccccggaggcactcgttaacattttcctttaaaaaa 46093516  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26900096 - 26900013
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 84  Q
    |||||||||||||||||||||| | ||||||| | || | ||||||||||  |||| |||| |||||||||| |||||||||||    
T  26900096 aaaaagtcaactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaagtgtttaaagagtgc 26900013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16663010 - 16663095
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgctt-aaagagtgctc 86  Q
    ||||||||||||||||||||| || ||||| | |||| ||||||||| | |||||||||| ||||||||||| || |||||||||||    
T  16663010 aaaaagtcaactattacaattaccaatgcagtgaatacacaacttttta-taaaaacttattatttaaagtgtttaaaagagtgctc 16663095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40673467 - 40673543
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaa 77  Q
    ||||| |||||||||||||||||  ||  |||||||| || ||||||| |||||||||||  |||||||||||||||    
T  40673467 aaaaattcaactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaagtgcttaa 40673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42846079 - 42846019
Alignment:
Q  1 aaaaagtcaactattacaatttccgat-gcattcaatatacaacttttcattaaaaactta 60  Q
    ||||||||||||||| |||||| | || |||||||||| ||||||||||||||||||||||    
T  42846079 aaaaagtcaactatttcaattttcaattgcattcaatacacaacttttcattaaaaactta 42846019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 52249359 - 52249447
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccgg 89  Q
    ||||||| |||||||||||| ||  ||  ||||||||||||||||||  | || |||||| || |||||||||||||| ||||||||||    
T  52249359 aaaaagttaactattacaatctctaatatattcaatatacaactttttttaaataacttattaattaaagtgcttaaaaagtgctccgg 52249447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 39551928 - 39551818
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||| |||||||| ||||||| | || || |||||| |||||||||||| || ||||||||| |||||||| ||||||||| | | | |  |||| |||    
T  39551928 aaaaaatcaactat-acaattttcaatacactcaataaacaacttttcataaagaacttactaattaaagtgtttaaagagtaccctgaaagcactcgtt 39551830  T
Q  101 aacatttccctt 112  Q
    ||||||||||||    
T  39551829 aacatttccctt 39551818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41309927 - 41309816
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatata---caacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacactt 97  Q
    ||||||| || ||||||||||| | |||||||  |||||   ||| |||||||||||||||||  |||||||||| ||||||||||| ||||| |||||     
T  41309927 aaaaagttaattattacaattttcaatgcatttgatatagtacaatttttcattaaaaacttatcatttaaagtgtttaaagagtgc-ccgga-acactc 41309830  T
Q  98 gttaacatttccct 111  Q
    ||||| ||||||||    
T  41309829 gttaatatttccct 41309816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49362427 - 49362368
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaactta 60  Q
    ||||||| |||||||||||||||| ||| ||| ||||||||| |||| ||||||||||||    
T  49362427 aaaaagttaactattacaatttccaatgtatttaatatacaattttttattaaaaactta 49362368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 47638928 - 47639006
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaag 79  Q
    ||||||| ||||||||||||||   ||||| |||||| |||| ||||||| || ||||||||| ||||| |||||||||    
T  47638928 aaaaagttaactattacaatttttaatgcactcaatacacaatttttcataaagaacttactaattaaaatgcttaaag 47639006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 12086835 - 12086727
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtta 101  Q
    ||||| || |||||| ||||| |  ||||||||||| |||  |||||||||||||||||||||||  ||| |||||| ||||  |||  | |||| ||||    
T  12086835 aaaagacatctattataattttcagtgcattcaatacacattttttcattaaaaacttactatttcgagtacttaaatagtgtcccgagggcactcgtta 12086736  T
Q  102 acatttccc 110  Q
    |||||||||    
T  12086735 acatttccc 12086727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 34591113 - 34591053
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccct 111  Q
    ||||||||||||||| |  || ||||||||||| ||| |||||||| ||||||||||||||    
T  34591113 taaaaacttactattaatggtccttaaagagtgttccagagacactcgttaacatttccct 34591053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35177889 - 35177782
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    ||||||| || ||||| ||| | | ||||||| | ||||||| ||||  ||||||| ||||||||| |||||||||| || |||| || | ||||| |||    
T  35177889 aaaaagttaaatattataatattcaatgcatttagtatacaattttttcttaaaaatttactattttaagtgcttaacgaatgcttcgaaaacactcgtt 35177790  T
Q  101 aacatttc 108  Q
    ||||||||    
T  35177789 aacatttc 35177782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 48811441 - 48811335
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||| | | |||||| || | ||||||| | || |||| ||||||| |||||||||||||| |||||  ||||||||| |  |||||||||| |||    
T  48811441 aaaaagtctaatgttacaaatttcaatgcattgattacacaatttttcat-aaaaacttactattaaaagtttttaaagagtacctcggagacactcgtt 48811343  T
Q  101 aacatttc 108  Q
    ||||||||    
T  48811342 aacatttc 48811335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 25317887 - 25317956
Alignment:
Q  51 taaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttccctttaaaaaat 120  Q
    |||||| ||||||||||| || |||||  ||||| ||||||||||| |||||||||| || | |||||||    
T  25317887 taaaaatttactatttaaggtccttaaccagtgccccggagacactggttaacattttccataaaaaaat 25317956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 26143164 - 26143213
Alignment:
Q  34 aatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    |||| |||| |||||||||||||||||| ||||||| || ||||||||||    
T  26143164 aatacacaaattttcattaaaaacttaccatttaaaatgtttaaagagtg 26143213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 122
Target Start/End: Original strand, 29385747 - 29385776
Alignment:
Q  93 cacttgttaacatttccctttaaaaaatta 122  Q
    ||||||||||||||||||||||||||||||    
T  29385747 cacttgttaacatttccctttaaaaaatta 29385776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42939865 - 42939926
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttact 62  Q
    ||||||||||||||| |||||| | ||| ||| |||| |||| |||||||| ||||||||||    
T  42939865 aaaaagtcaactattgcaattttcaatgaatttaatacacaatttttcatttaaaacttact 42939926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 30463978 - 30463922
Alignment:
Q  52 aaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacatttc 108  Q
    ||||| |||||||| ||||   |||||||||||||| |||||||| |||||||||||    
T  30463978 aaaaaattactattaaaaggtattaaagagtgctccagagacactcgttaacatttc 30463922  T

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Target: scaffold0003 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 103722 - 103608
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtt 100  Q
    |||||||| | |||||||||||   ||||||||||||||||| ||||||||||||| ||| ||||| || |||||||||||||||| ||| |||||  ||    
T  103722 aaaaagtcgaatattacaatttttaatgcattcaatatacaatttttcattaaaaatttattattttaaatgcttaaagagtgctctggaaacactaatt 103623  T
Q  101 aacatttccctttaa 115  Q
    |||||||||| ||||    
T  103622 aacatttcccattaa 103608  T

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Target: scaffold0268 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 20321 - 20240
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtg 83  Q
    ||||||| |||||||||||||||  ||||||| |||| ||||||||||| ||||||||||  |||||||||||||||||||||    
T  20321 aaaaagttaactattacaatttcaaatgcattaaatacacaacttttca-taaaaacttatcatttaaagtgcttaaagagtg 20240  T

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Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 1099 - 1204
Alignment:
Q  2 aaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggagacacttgtta 101  Q
    |||| |||||||||| ||||||| |||||||||||| | || ||||||||||||||||  |||||||| || ||||||| |   |||||| |||| ||||    
T  1099 aaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaagaatatcccggaggcactcgtta 1198  T
Q  102 acattt 107  Q
    ||||||    
T  1199 acattt 1204  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25111 - 25201
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcat-taaaaacttactatttaaagtgcttaaagagtgctccgga 90  Q
    ||||| |||||||||||||||| | ||||||| | ||  ||| |||| ||  |||||||||||||||||| |||||||||||| |||||||    
T  25111 aaaaaatcaactattacaattttcaatgcattgattactcaattttttataaaaaaacttactatttaaaatgcttaaagagttctccgga 25201  T

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Target: scaffold1444 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 939 - 884
Alignment:
Q  52 aaaaacttactatttaaagtgcttaaagagtgctccggagacacttgttaacattt 107  Q
    |||||||||| ||||  |||| ||||||||||| ||||||||||| ||||||||||    
T  939 aaaaacttaccatttttagtgtttaaagagtgccccggagacactcgttaacattt 884  T

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Target: scaffold1444; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1777 - 1723
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaa 55  Q
    |||||| ||||||||||||||||| ||||||| |||  |||||||||||| ||||    
T  1777 aaaaagccaactattacaatttccaatgcattgaatgcacaacttttcataaaaa 1723  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1441 - 1502
Alignment:
Q  1 aaaaagtcaactattacaatttccgatgcattcaatatacaacttttcattaaaaacttact 62  Q
    |||||||||||||||||||||| |  || ||| |||| | |||||||||||||||| |||||    
T  1441 aaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttact 1502  T

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