View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17891_low_13 (Length: 227)
Name: NF17891_low_13
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17891_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 40459191 - 40458985
Alignment:
| Q |
7 |
gtgatatttccaaatagaaattatattgagtactacatgtcaacatcaaaattatagagtaaaaacattcattgagaatttgaaatacacgctaacacaa |
106 |
Q |
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| T |
40459191 |
gtgatatttccaaatagaaattatattgagtactacatgtcaacatcaaaattatagagtaaaaacattcattgagaatttgaaatacacgctaacacaa |
40459092 |
T |
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| Q |
107 |
tcagcaaactaaacaatcggtctaaacctaacagagaaaataaaacctaattaacttgaaattttttaagaaaaacccttcaaataaaacttaacatatt |
206 |
Q |
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| T |
40459091 |
tcagcaaattaaacaatctgtctaaacataacagagaaaataaaacctaattaacttgaaattttttaagaaaaacccttcaaataaaacctaacatata |
40458992 |
T |
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| Q |
207 |
tcagaaa |
213 |
Q |
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||||||| |
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| T |
40458991 |
tcagaaa |
40458985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 40279472 - 40279609
Alignment:
| Q |
24 |
aaattatattgagtactacatgtcaacatcaaaattatagagtaaaaacattcattgagaatttgaaatacacgctaacacaatcagcaaactaaacaat |
123 |
Q |
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|||||| |||||||||| |||| |||||||||||||||||||||| ||| |||| | | |||||||||||||| ||||||||| ||| ||| |||||||| |
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| T |
40279472 |
aaattacattgagtactgcatgccaacatcaaaattatagagtaataacgttcacttaaaatttgaaatacacactaacacaaccaggaaattaaacaat |
40279571 |
T |
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| Q |
124 |
cggtctaaacctaacagagaaaataaaacctaattaac |
161 |
Q |
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| T |
40279572 |
ctgtcagaacataatggcgaaaataaaacctaattaac |
40279609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 40458878 - 40458741
Alignment:
| Q |
24 |
aaattatattgagtactacatgtcaacatcaaaattatagagtaaaaacattcattgagaatttgaaatacacgctaacacaatcagcaaactaaacaat |
123 |
Q |
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|||||| |||||||||| |||| |||||||||||||||||||||| ||| |||| | | |||||||||||||| ||||||||| ||| ||| |||||||| |
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| T |
40458878 |
aaattacattgagtactgcatgccaacatcaaaattatagagtaataacgttcacttaaaatttgaaatacacactaacacaaccaggaaattaaacaat |
40458779 |
T |
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| Q |
124 |
cggtctaaacctaacagagaaaataaaacctaattaac |
161 |
Q |
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| ||| ||| ||| | |||||||||||||||||||| |
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| T |
40458778 |
ctgtcagaacataatggcgaaaataaaacctaattaac |
40458741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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