View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17891_low_3 (Length: 496)
Name: NF17891_low_3
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17891_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Complemental strand, 39281799 - 39281328
Alignment:
| Q |
10 |
tgagaaggagcacatgattaatttattgagatttcatctgacacaaaaatttggtaaggttttnnnnnnnnnn-ttaacacaagaattcgacgccacagc |
108 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
39281799 |
tgagaaggagcagatgattaatttattgagatttcatctgacacaaaaatttggtaaggttttaaaaaaaaaaattaacacaagagttcgacgccacagc |
39281700 |
T |
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| Q |
109 |
tcttgcaacgtgcagttatgtatggcaagaatgaaatccttcaaaagtgatgtatctacagtgaaatttccacttaccgctatgtgaagattattgatga |
208 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39281699 |
tcttgcaacgtgcagttatgtatggcaaaaacgaaatccttcaaaagtgatgtatctacagcaaaatttccacttaccgctatgtgaagattattgatga |
39281600 |
T |
|
| Q |
209 |
tggatggtggaaagccaaaaatctaacacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaatttcc |
308 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39281599 |
tggatggtggaaagccaaaaatctgccacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaatttcc |
39281500 |
T |
|
| Q |
309 |
catgagaatagtaaattgctcagaataagaattac--tatctgacaattcaaatcaatgagaattataaagtgaatctcttatggcaggagttttaaaac |
406 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39281499 |
catgagaatagtaaattgctcagaatcagaattactatatcagacaattcaaatcaacgagaattatacagtgaatctcttatggcaggagttttaaaac |
39281400 |
T |
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| Q |
407 |
accaaattggccttttaacgagatgaagctctctgttccaccaaataaacatagaccaaggtcttactccct |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39281399 |
accaaattggccttttaacgagatgaagctctctgttccaccaaataaacatagaccaaggtcttactccct |
39281328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 17348529 - 17348648
Alignment:
| Q |
205 |
atgatggatggtggaaagccaaaaatctaacacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaat |
304 |
Q |
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||||||||||||||| ||| |||||| || |||| ||||||||||||||| ||| ||||||||| ||||||||| || | |||||| ||||| || || |
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| T |
17348529 |
atgatggatggtggatagctaaaaattta-cacacaaatatggcaatgcaccctttggatgaaatgtggcggattatggaggctag-taaaagtcctgat |
17348626 |
T |
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| Q |
305 |
ttcccatgagaatagtaaattg |
326 |
Q |
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| T |
17348627 |
ttgccatgagaatagtaaattg |
17348648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 17348789 - 17348876
Alignment:
| Q |
391 |
gcaggagttttaaaacaccaaattggccttttaacgagatgaagctctctgttccaccaaataaacatagaccaaggtcttactccct |
478 |
Q |
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||||||| | |||||||||||||||||||| ||| || | |||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
17348789 |
gcaggagctataaaacaccaaattggccttctaatatgaaaacgctctccattccaccaaataaacatagaagaaggtcttactccct |
17348876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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