View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17891_low_5 (Length: 481)
Name: NF17891_low_5
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17891_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Complemental strand, 8739005 - 8738555
Alignment:
| Q |
15 |
caaaggtgacagcatcatgatactcatgtataacccaattggtcctaacagggcatttatttccggtagctttcaaatagaaaacaagaatcttcttagt |
114 |
Q |
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| T |
8739005 |
caaaggtgacagcatcatgatactcatgtataacccagttggtcctaacatggcatttatttccggtagctttcaaatagaaaacaagaatcttcttagt |
8738906 |
T |
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| Q |
115 |
tgctataactttgtcggtaccatgaattttaatatcatgttcaattccagtagctttccaaaaccctaactccgttgctcggttaaactttttactcttt |
214 |
Q |
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| T |
8738905 |
tgctataactttgtcggtaccatgaattttaatatcatgttcaattccagtagctttccaaaaccctaactccgttgctcggttaaactttttactcttt |
8738806 |
T |
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| Q |
215 |
gcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaagaaggattatatcaaaaagaaaatt |
314 |
Q |
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| T |
8738805 |
gcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaagaaggattatatcaaaaagaaaatt |
8738706 |
T |
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| Q |
315 |
ataagaaaataattactaggtttgcaaagaaaataaagacgaggtttgnnnnnnnnacatacatggtaattcccaaggctcaaacctgcaaacatcaact |
414 |
Q |
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| T |
8738705 |
ataagaaaataattactaggtttgcaaagaaaataaagacgaggtttg-tttttttacatacatggtaattcccaaggctcaaacctgcaaacatcaact |
8738607 |
T |
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| Q |
415 |
tctgctatgacattgttaacatcggaaacattaccaagtaacttgttcttga |
466 |
Q |
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| T |
8738606 |
tctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttga |
8738555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 14372433 - 14372505
Alignment:
| Q |
197 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgatttta |
269 |
Q |
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| T |
14372433 |
ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgatttta |
14372505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 8705294 - 8705222
Alignment:
| Q |
197 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgatttta |
269 |
Q |
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| T |
8705294 |
ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgatttta |
8705222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 291
Target Start/End: Complemental strand, 8740370 - 8740276
Alignment:
| Q |
197 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaaga |
291 |
Q |
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| T |
8740370 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaaga |
8740276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 8690862 - 8690782
Alignment:
| Q |
378 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatcggaaacattaccaagtaactt |
458 |
Q |
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| T |
8690862 |
tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaactt |
8690782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 8723729 - 8723641
Alignment:
| Q |
197 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctga |
285 |
Q |
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| T |
8723729 |
ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctga |
8723641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 8722409 - 8722262
Alignment:
| Q |
159 |
ttccagtagctttccaaaaccctaactccgttgctcggttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtc |
258 |
Q |
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||||||||||||||||||| || ||||| ||| ||| |||||||| |||| | || ||||| |||| | ||||||||||||||||||||||| ||| |
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| T |
8722409 |
ttccagtagctttccaaaatccaaactctgttcctctcttaaacttattacacctttgatacttgtaattgcgaggacacaagaaaaaccattccgagtc |
8722310 |
T |
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| Q |
259 |
atatgattttattatcgaacgagctgacaaagaaggattatatcaaaa |
306 |
Q |
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| T |
8722309 |
atcggatcttatcactgaatgagctgaaacagaacgaatatatcaaaa |
8722262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 8705134 - 8705054
Alignment:
| Q |
378 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatcggaaacattaccaagtaactt |
458 |
Q |
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|||||| |||||||| ||| | |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||||| |
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| T |
8705134 |
tggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtaactt |
8705054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 8691015 - 8690920
Alignment:
| Q |
196 |
gttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaaga |
291 |
Q |
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||||||| ||||||| |||||||| || ||||| | |||||| |||||||||||||| || |||| |||||||| | |||| |||||| ||||| |
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| T |
8691015 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga |
8690920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 8722211 - 8722154
Alignment:
| Q |
378 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaaca |
435 |
Q |
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| T |
8722211 |
tggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaaca |
8722154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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