View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17891_low_6 (Length: 352)
Name: NF17891_low_6
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17891_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 27 - 340
Target Start/End: Original strand, 40279707 - 40280020
Alignment:
| Q |
27 |
aatttgtagtactctatggaaggaagggtttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40279707 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
40279806 |
T |
|
| Q |
127 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40279807 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttc |
40279906 |
T |
|
| Q |
227 |
tttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgcatgatcacacatctcgt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
40279907 |
tttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgcacgatcacacatctcgt |
40280006 |
T |
|
| Q |
327 |
tccttctttcctct |
340 |
Q |
| |
|
|||||||||||||| |
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|
| T |
40280007 |
tccttctttcctct |
40280020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 27 - 340
Target Start/End: Complemental strand, 40458643 - 40458330
Alignment:
| Q |
27 |
aatttgtagtactctatggaaggaagggtttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458643 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
40458544 |
T |
|
| Q |
127 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458543 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttc |
40458444 |
T |
|
| Q |
227 |
tttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgcatgatcacacatctcgt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
40458443 |
tttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgcacgatcacacatctcgt |
40458344 |
T |
|
| Q |
327 |
tccttctttcctct |
340 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40458343 |
tccttctttcctct |
40458330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 40284651 - 40284981
Alignment:
| Q |
10 |
gcacagaaaatataatgaatttgtagtactctatggaaggaagggtttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatcta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40284651 |
gcacagaaaatataatgaatttgtagtactctatggaaggaaggatttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatcta |
40284750 |
T |
|
| Q |
110 |
tttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
40284751 |
tttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacaccctatcatttgacctaacagcaagaacaacc |
40284850 |
T |
|
| Q |
210 |
aatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgc |
309 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
40284851 |
aattgatgtttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattcaccgggtgc |
40284950 |
T |
|
| Q |
310 |
atgatcacacatctcgttccttctttcctct |
340 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| |
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|
| T |
40284951 |
acgatcacacatctcattccttctttcctct |
40284981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 264
Target Start/End: Original strand, 39600421 - 39600588
Alignment:
| Q |
97 |
ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaac |
196 |
Q |
| |
|
||||||||| | |||||||||||| || || || |||| ||||||||||||||| ||||| || | ||| |||||||| || ||||| ||||||||| |
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|
| T |
39600421 |
ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac |
39600520 |
T |
|
| Q |
197 |
agcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccaca |
264 |
Q |
| |
|
| ||| ||||||||||| || ||||||||||||| || | ||||| ||| || || ||||||||||| |
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|
| T |
39600521 |
aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcgttttcttgtccaca |
39600588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 39781506 - 39781385
Alignment:
| Q |
143 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttgtcatcaatggat |
242 |
Q |
| |
|
||||||||||||||||| || | ||| |||||||| || ||||| |||||||| | ||||||||||||||| || ||||||||||||| || | ||||| |
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|
| T |
39781506 |
ttgcagaaatacttcaaatgttgaagcttgcaacacccaatcatctgacccaataacaagaacaaccaattaatggttctcttctttgtgattattggat |
39781407 |
T |
|
| Q |
243 |
gcattgctttctcttgtccaca |
264 |
Q |
| |
|
||| || || ||||||||||| |
|
|
| T |
39781406 |
tcatagcattttcttgtccaca |
39781385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 25044391 - 25044476
Alignment:
| Q |
143 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctt |
228 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||| || | |||||| |||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
25044391 |
ttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttctt |
25044476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 25040653 - 25040729
Alignment:
| Q |
143 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt |
219 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| || || ||||| |||| || || ||||||||||| ||||| |
|
|
| T |
25040653 |
ttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacagaaacaaccaattgatatt |
25040729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 28649868 - 28649944
Alignment:
| Q |
143 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt |
219 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||| || | |||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
28649868 |
ttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatatt |
28649944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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