View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17891_low_7 (Length: 320)

Name: NF17891_low_7
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17891_low_7
NF17891_low_7
[»] chr7 (8 HSPs)
chr7 (8-304)||(39332836-39333132)
chr7 (8-284)||(39569427-39569703)
chr7 (8-278)||(39552595-39552865)
chr7 (8-279)||(39344106-39344377)
chr7 (8-291)||(39358682-39358965)
chr7 (8-287)||(39543363-39543642)
chr7 (58-129)||(39585472-39585543)
chr7 (61-129)||(39579142-39579210)
[»] chr4 (2 HSPs)
chr4 (53-125)||(2882142-2882214)
chr4 (53-106)||(2871849-2871902)
[»] chr8 (1 HSPs)
chr8 (61-98)||(4494209-4494246)
[»] chr2 (3 HSPs)
chr2 (53-106)||(44215153-44215206)
chr2 (53-86)||(44238464-44238497)
chr2 (53-87)||(44227330-44227364)
[»] chr1 (1 HSPs)
chr1 (55-104)||(2166851-2166900)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 39332836 - 39333132
Alignment:
Q  8 ggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 107  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  39332836 ggaggaacagtgatgcagccgagattttttcaaattctttccaccaaggagatgatgaagaagctcttaaatgggctgcaattcagatccttcctacttt 39332935  T
Q  108 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||| | | |||| ||||| ||||||||||| |||||| |||||||||  |||||||||||||||    
T  39332936 tgaacgtttgaggaaaggtttgctcacttcacttcaaggtggaaccatcgagattgatgttgagaaccttgggatgcaagaaaagaaagatttgctcgaa 39333035  T
Q  208 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaaaaaatattttgtccttg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39333036 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaaaaaatattttgtccttg 39333132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 39569703 - 39569427
Alignment:
Q  8 ggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 107  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  39569703 ggaggagcagtgatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 39569604  T
Q  108 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcgaa 207  Q
    ||  |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  39569603 tgcgcgtttgaggaaaggtttgctcacttcacttcaaggggaagccgttgagattgatattgagaagcttgggctgcaagaaagaaaagatttgcttgaa 39569504  T
Q  208 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggatt 284  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  39569503 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatt 39569427  T

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Target: chr7; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 39552865 - 39552595
Alignment:
Q  8 ggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 107  Q
    |||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39552865 ggaggaacagtgatgctgctgagatcttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 39552766  T
Q  108 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| || |||    
T  39552765 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccactgagatcgatgttgagaaccttgggttgcaagaaagaaaagatttacttgaa 39552666  T
Q  208 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggtt 278  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  39552665 agacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggtt 39552595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 39344106 - 39344377
Alignment:
Q  8 ggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 107  Q
    |||||| ||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344106 ggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 39344205  T
Q  108 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcgaa 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||||||||||||||| |||||| ||||||||||||||| |||    
T  39344206 tgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaaagatttgcttgaa 39344305  T
Q  208 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttc 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  39344306 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatggacaggttc 39344377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 39358682 - 39358965
Alignment:
Q  8 ggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 107  Q
    |||||| ||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  39358682 ggaggaacagtgatgctgctgagatcttttcaaattcttttcaccaagaagatgatgaagaatctcttaaatgggctgcaattcagaagcttcctacttt 39358781  T
Q  108 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcgaa 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||||||||||||||| ||||||||||||||||||| || |||    
T  39358782 tgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagaaagaaaagatttacttgaa 39358881  T
Q  208 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaaaaaa 291  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  39358882 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggataggttcgaattcaaaaaa 39358965  T

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Target: chr7; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 39543642 - 39543363
Alignment:
Q  8 ggaggagcagagatgcagctgagattttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 107  Q
    |||||| ||| ||||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39543642 ggaggaacagtgatgctgctgagattttttctaattcttttcgccaagaagatgatgaagaagctcttaaatgggctgccattcagaaacttcctacttt 39543543  T
Q  108 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccattgagatcgatgttgagaagcttgggctgcaagaaagaaaagatttgctcgaa 207  Q
    || |||||| ||||||||||||||| |||  || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  39543542 tgcacgtttaaggaaaggtttgctctctttgctgcaaggggaagccactgagatcgatgttgagaagcttgggttgcaagaaagaaaagatttacttgaa 39543443  T
Q  208 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggattcaa 287  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||| ||||||    
T  39543442 agacttgttagacttgctgaagaggacaatgagaagtttttgctcaaactcaaggatcgaatcgacaggttcgaattcaa 39543363  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 39585543 - 39585472
Alignment:
Q  58 gatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttg 129  Q
    ||||||||||| ||| | |||||||||||||||||||  ||||| ||| ||| ||| ||||||| |||||||    
T  39585543 gatgatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39585472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 39579210 - 39579142
Alignment:
Q  61 gatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttg 129  Q
    |||||||| ||| | |||||||||||||||||||  ||||| ||| ||| ||| ||||||| |||||||    
T  39579210 gatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39579142  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 2882142 - 2882214
Alignment:
Q  53 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaagg 125  Q
    |||| |||||||||||||||||||||||||||||| || | ||||| ||||||| | | ||||||||||||||    
T  2882142 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 2882214  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 2871849 - 2871902
Alignment:
Q  53 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 106  Q
    ||||||||||||||||||| || ||||||||||||||| | ||||| |||||||    
T  2871849 aagaagatgatgaagaagccctcaaatgggctgcaattgaaaaactccctactt 2871902  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 4494209 - 4494246
Alignment:
Q  61 gatgaagaagctcttaaatgggctgcaattcagaaact 98  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4494209 gatgaagaagctcttaaatgggctgcaattgagaaact 4494246  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 44215206 - 44215153
Alignment:
Q  53 aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt 106  Q
    |||||||||||||||||||||| |||||||||||| || | ||||| |||||||    
T  44215206 aagaagatgatgaagaagctctcaaatgggctgcacttgaaaaactacctactt 44215153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 44238497 - 44238464
Alignment:
Q  53 aagaagatgatgaagaagctcttaaatgggctgc 86  Q
    ||||||||||||||||||||||||||||||||||    
T  44238497 aagaagatgatgaagaagctcttaaatgggctgc 44238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 44227364 - 44227330
Alignment:
Q  53 aagaagatgatgaagaagctcttaaatgggctgca 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  44227364 aagaagatgatgaagaagctctcaaatgggctgca 44227330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 2166900 - 2166851
Alignment:
Q  55 gaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctac 104  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||||||    
T  2166900 gaagacgatgaagaagctcttaaatgggctgctattgagagacttcctac 2166851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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