View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17891_low_8 (Length: 271)

Name: NF17891_low_8
Description: NF17891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17891_low_8
NF17891_low_8
[»] chr3 (14 HSPs)
chr3 (53-262)||(1627299-1627509)
chr3 (53-251)||(1610164-1610376)
chr3 (53-178)||(1615118-1615244)
chr3 (192-247)||(31195195-31195250)
chr3 (192-247)||(52773063-52773118)
chr3 (192-251)||(1615032-1615090)
chr3 (22-57)||(49872976-49873011)
chr3 (22-53)||(51549582-51549613)
chr3 (194-244)||(8836235-8836285)
chr3 (213-247)||(17479396-17479430)
chr3 (22-56)||(46597535-46597569)
chr3 (22-54)||(6510213-6510245)
chr3 (192-244)||(53978162-53978214)
chr3 (194-242)||(55310170-55310218)
[»] scaffold0013 (1 HSPs)
scaffold0013 (192-247)||(248956-249011)
[»] chr7 (9 HSPs)
chr7 (192-247)||(16256553-16256608)
chr7 (24-64)||(44569107-44569147)
chr7 (194-247)||(18481653-18481706)
chr7 (22-61)||(1830803-1830842)
chr7 (22-61)||(21298272-21298311)
chr7 (22-62)||(17167813-17167853)
chr7 (22-54)||(29141184-29141216)
chr7 (22-54)||(35913311-35913343)
chr7 (194-250)||(38847307-38847363)
[»] chr6 (10 HSPs)
chr6 (192-247)||(26133476-26133531)
chr6 (22-64)||(24062421-24062463)
chr6 (22-53)||(31851757-31851788)
chr6 (22-53)||(31886055-31886086)
chr6 (22-52)||(7922317-7922347)
chr6 (194-251)||(14815029-14815086)
chr6 (194-247)||(28519707-28519760)
chr6 (22-51)||(30381567-30381596)
chr6 (22-54)||(56139-56171)
chr6 (22-58)||(24387788-24387824)
[»] chr2 (12 HSPs)
chr2 (22-62)||(18555834-18555874)
chr2 (22-61)||(3364318-3364357)
chr2 (22-61)||(16577374-16577413)
chr2 (22-56)||(34635702-34635736)
chr2 (195-244)||(13130806-13130855)
chr2 (22-51)||(18701552-18701581)
chr2 (22-51)||(19493277-19493306)
chr2 (22-54)||(19493475-19493507)
chr2 (22-54)||(20182262-20182294)
chr2 (22-54)||(22116153-22116185)
chr2 (22-54)||(38386186-38386218)
chr2 (22-54)||(38937535-38937567)
[»] scaffold0014 (1 HSPs)
scaffold0014 (192-247)||(95839-95894)
[»] chr4 (14 HSPs)
chr4 (192-247)||(13988023-13988078)
chr4 (194-248)||(23167449-23167503)
chr4 (22-53)||(51396158-51396189)
chr4 (22-52)||(21798592-21798622)
chr4 (194-244)||(35087429-35087479)
chr4 (194-251)||(5239571-5239628)
chr4 (194-251)||(10652968-10653025)
chr4 (194-251)||(10867113-10867170)
chr4 (22-55)||(41331766-41331799)
chr4 (22-55)||(47320983-47321016)
chr4 (22-54)||(11563544-11563576)
chr4 (192-244)||(18254022-18254074)
chr4 (22-58)||(24215768-24215804)
chr4 (22-54)||(37273422-37273454)
[»] chr1 (13 HSPs)
chr1 (22-64)||(8928803-8928845)
chr1 (22-55)||(28410911-28410944)
chr1 (22-58)||(22604689-22604725)
chr1 (22-56)||(2472386-2472420)
chr1 (22-52)||(35034322-35034352)
chr1 (22-52)||(42736848-42736878)
chr1 (22-56)||(43635831-43635865)
chr1 (194-251)||(2359788-2359845)
chr1 (22-54)||(9439429-9439461)
chr1 (22-54)||(24987606-24987638)
chr1 (22-54)||(26095812-26095844)
chr1 (22-54)||(32131930-32131962)
chr1 (192-244)||(49641085-49641137)
[»] chr8 (9 HSPs)
chr8 (194-247)||(21029626-21029679)
chr8 (22-53)||(6952929-6952960)
chr8 (22-53)||(27198143-27198174)
chr8 (22-56)||(27987553-27987587)
chr8 (22-56)||(28044855-28044889)
chr8 (22-56)||(34985349-34985383)
chr8 (22-55)||(12330330-12330363)
chr8 (192-244)||(15193144-15193196)
chr8 (22-62)||(27164685-27164725)
[»] chr5 (12 HSPs)
chr5 (194-247)||(42139696-42139749)
chr5 (22-58)||(11439824-11439860)
chr5 (22-53)||(31861490-31861521)
chr5 (22-56)||(22551518-22551552)
chr5 (194-244)||(26472138-26472188)
chr5 (22-52)||(38313170-38313200)
chr5 (194-251)||(26466806-26466863)
chr5 (22-54)||(10976774-10976806)
chr5 (22-54)||(15061850-15061882)
chr5 (22-54)||(15615101-15615133)
chr5 (25-53)||(32144922-32144950)
chr5 (22-58)||(35798710-35798746)
[»] scaffold0246 (1 HSPs)
scaffold0246 (22-54)||(15870-15902)
[»] scaffold0769 (1 HSPs)
scaffold0769 (22-56)||(4178-4212)
[»] scaffold0450 (1 HSPs)
scaffold0450 (22-56)||(7855-7889)
[»] scaffold0164 (1 HSPs)
scaffold0164 (192-244)||(27158-27210)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 53 - 262
Target Start/End: Complemental strand, 1627509 - 1627299
Alignment:
Q  53 taaattaaaatacgaagtcaccaattttgtacaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaaccgtaaaaattgacaattgt 152  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||    
T  1627509 taaattaaaatacgaagtcaccaattttgtaaaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaat-gtaaaaattgacaatggt 1627411  T
Q  153 ccag--ttttctatgcttgaattatattatgctaaaggaccagttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttt 250  Q
    ||||  |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  1627410 ccagagttttctatgcttgaattatattctgctaaaggaccagttgtgttgagactccccagcaaaatggaagagtagaaaaagagcatcaacacatttt 1627311  T
Q  251 atttcacaggtt 262  Q
    ||||||||||||    
T  1627310 atttcacaggtt 1627299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 1610376 - 1610164
Alignment:
Q  53 taaattaaaatacgaagtcaccaattttgtacaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaaccgtaaaaattgacaattgt 152  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||| |||||| ||| ||    
T  1610376 taaattaaaatatgaagtcgccaattttgt-caaaaattggttcttatgatagaaaatcaatattattttaaagttaaaattgtaagaattgataatggt 1610278  T
Q  153 c--cagttttctatgcttgaattatattatgctaaagg-------------accagttgtgttgagactctccagcaaaatggaagagtagaaagaaagc 237  Q
    |   ||||||||||| |||||||||||| |||||||||             | ||||||||||||||||| || ||||||||| ||||||||||  ||||    
T  1610277 cttgagttttctatgattgaattatattctgctaaagggatagaacatcaaatcagttgtgttgagactccccggcaaaatgggagagtagaaacgaagc 1610178  T
Q  238 atcaacacatttta 251  Q
    ||||||||||||||    
T  1610177 atcaacacatttta 1610164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 1615244 - 1615118
Alignment:
Q  53 taaattaaaatacgaagtcaccaattttgtacaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaaccgtaaaaattgacaattgt 152  Q
    ||||| |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||||||||||||  |||||||||| | || || ||||||| ||    
T  1615244 taaatcaaaatatgaa-tcaccaatttcgtacaaaaatacattcttatgatagaaaatcaatattattggcaagttaaaactgcaagaactgacaatggt 1615146  T
Q  153 cc--agttttctatgcttgaattatatt 178  Q
     |  ||||||||||||||||||| ||||    
T  1615145 actgagttttctatgcttgaattttatt 1615118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 31195250 - 31195195
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  31195250 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 31195195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 52773063 - 52773118
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  52773063 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 52773118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 1615090 - 1615032
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 251  Q
    ||||||| | |||||| ||| |||||||| ||||||||||||||||||||| ||||||||    
T  1615090 agttgtgataagactc-ccaacaaaatgggagagtagaaagaaagcatcaatacatttta 1615032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 49872976 - 49873011
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaat 57  Q
    ||||||||||||| ||||||||||||||||||||||    
T  49872976 tatattacagggggtaaagacctattaaccctaaat 49873011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 51549582 - 51549613
Alignment:
Q  22 tatattacaggggataaagacctattaaccct 53  Q
    ||||||||||||||||||||||||||||||||    
T  51549582 tatattacaggggataaagacctattaaccct 51549613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 8836235 - 8836285
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||| |||| ||| |||||||| ||||| |||||||||||||||||    
T  8836235 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaaca 8836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 17479430 - 17479396
Alignment:
Q  213 caaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||||||| ||||||||||||||||||||||||||    
T  17479430 caaaatgggagagtagaaagaaagcatcaacacat 17479396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 46597535 - 46597569
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  46597535 tatattacagggggtaaagacctattaaccctaaa 46597569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 6510245 - 6510213
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  6510245 tatattacagggggtaaagacctattaacccta 6510213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 53978162 - 53978214
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  53978162 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 53978214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 55310170 - 55310218
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaa 242  Q
    ||||||||| |||| ||| |||||||| ||||| |||||||||||||||    
T  55310170 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaa 55310218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 249011 - 248956
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  249011 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 248956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 16256553 - 16256608
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  16256553 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 16256608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 44569107 - 44569147
Alignment:
Q  24 tattacaggggataaagacctattaaccctaaattaaaata 64  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  44569107 tattacaggggataaagacctattaaccctaaatttaaata 44569147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 18481706 - 18481653
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    ||||||||| || | ||| |||||||||||||| ||||||||||||||||||||    
T  18481706 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 18481653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 1830842 - 1830803
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaa 61  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  1830842 tatattacagggggtaaagccctattaaccctaaattaaa 1830803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 21298272 - 21298311
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaa 61  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  21298272 tatattacaagggataaagacctattaacccttaattaaa 21298311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 17167813 - 17167853
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaaa 62  Q
    |||||||||||||||||||  |||||||||||||| |||||    
T  17167813 tatattacaggggataaagcactattaaccctaaaataaaa 17167853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 29141184 - 29141216
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    |||||||||||||||||||||||||||| ||||    
T  29141184 tatattacaggggataaagacctattaatccta 29141216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 35913311 - 35913343
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  35913311 tatattacagggggtaaagacctattaacccta 35913343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 38847363 - 38847307
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttt 250  Q
    |||||||||||| |  || |||||||| ||||| |||||||| ||||||||||||||    
T  38847363 ttgtgttgagacacctcaacaaaatgggagagtggaaagaaaacatcaacacatttt 38847307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 26133476 - 26133531
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  26133476 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 26133531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 24062421 - 24062463
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaaata 64  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  24062421 tatattacatgggataaagacctattaaccctaaatttaaata 24062463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 31851788 - 31851757
Alignment:
Q  22 tatattacaggggataaagacctattaaccct 53  Q
    ||||||||||||||||||||||||||||||||    
T  31851788 tatattacaggggataaagacctattaaccct 31851757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 31886055 - 31886086
Alignment:
Q  22 tatattacaggggataaagacctattaaccct 53  Q
    ||||||||||||||||||||||||||||||||    
T  31886055 tatattacaggggataaagacctattaaccct 31886086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 7922347 - 7922317
Alignment:
Q  22 tatattacaggggataaagacctattaaccc 52  Q
    |||||||||||||||||||||||||||||||    
T  7922347 tatattacaggggataaagacctattaaccc 7922317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 14815029 - 14815086
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 251  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  14815029 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 14815086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 28519760 - 28519707
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    ||||||||| || | ||| |||||||| ||||| ||||||||||||||||||||    
T  28519760 ttgtgttgaaaccccccaacaaaatgggagagtggaaagaaagcatcaacacat 28519707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 30381596 - 30381567
Alignment:
Q  22 tatattacaggggataaagacctattaacc 51  Q
    ||||||||||||||||||||||||||||||    
T  30381596 tatattacaggggataaagacctattaacc 30381567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 56139 - 56171
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  56139 tatattacagggggtaaagacctattaacccta 56171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 24387788 - 24387824
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaatt 58  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  24387788 tatattacagggggtaaagacctattaacccaaaatt 24387824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 18555834 - 18555874
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaaa 62  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  18555834 tatattacaggggataaagacctattaaccctaaaataaaa 18555874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 3364357 - 3364318
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaa 61  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3364357 tatattacaggggataaagacctattaaccctagattaaa 3364318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 16577374 - 16577413
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaa 61  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  16577374 tatattacagggggtaaagacctattaaccctaaaataaa 16577413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 34635736 - 34635702
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  34635736 tatattacagggggtaaagacctattaaccctaaa 34635702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 13130806 - 13130855
Alignment:
Q  195 tgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    |||||||| |||| ||| |||||||| ||||| |||||||||||||||||    
T  13130806 tgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaaca 13130855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 18701581 - 18701552
Alignment:
Q  22 tatattacaggggataaagacctattaacc 51  Q
    ||||||||||||||||||||||||||||||    
T  18701581 tatattacaggggataaagacctattaacc 18701552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 19493306 - 19493277
Alignment:
Q  22 tatattacaggggataaagacctattaacc 51  Q
    ||||||||||||||||||||||||||||||    
T  19493306 tatattacaggggataaagacctattaacc 19493277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 19493475 - 19493507
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  19493475 tatattacagggggtaaagacctattaacccta 19493507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 20182294 - 20182262
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    |||||||||||||||||| ||||||||||||||    
T  20182294 tatattacaggggataaaaacctattaacccta 20182262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 22116185 - 22116153
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  22116185 tatattacagggggtaaagacctattaacccta 22116153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 38386186 - 38386218
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||||||||||| |||||||||||    
T  38386186 tatattacaggggataaagacatattaacccta 38386218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 38937535 - 38937567
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  38937535 tatattacagggggtaaagacctattaacccta 38937567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 95894 - 95839
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||| ||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  95894 agttatgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 95839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 13988023 - 13988078
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    |||| ||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  13988023 agttatgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 13988078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 23167503 - 23167449
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatt 248  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||| |||||||||    
T  23167503 ttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacatt 23167449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 51396189 - 51396158
Alignment:
Q  22 tatattacaggggataaagacctattaaccct 53  Q
    ||||||||||||||||||||||||||||||||    
T  51396189 tatattacaggggataaagacctattaaccct 51396158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 21798592 - 21798622
Alignment:
Q  22 tatattacaggggataaagacctattaaccc 52  Q
    |||||||||||||||||||||||||||||||    
T  21798592 tatattacaggggataaagacctattaaccc 21798622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 35087429 - 35087479
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||| |||| |||||||||||| |||||||| ||||| ||||||||    
T  35087429 ttgtgttgaaactccccagcaaaatgggagagtagagagaaaacatcaaca 35087479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 5239571 - 5239628
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 251  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  5239571 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 5239628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 10652968 - 10653025
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 251  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  10652968 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 10653025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 10867113 - 10867170
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 251  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  10867113 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 10867170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 41331799 - 41331766
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaa 55  Q
    |||||| |||||||||||||||||||||||||||    
T  41331799 tatattgcaggggataaagacctattaaccctaa 41331766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 47321016 - 47320983
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaa 55  Q
    ||||||||||||||||||||||||| ||||||||    
T  47321016 tatattacaggggataaagacctataaaccctaa 47320983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 11563544 - 11563576
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  11563544 tatattacagggggtaaagacctattaacccta 11563576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 18254022 - 18254074
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  18254022 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 18254074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 24215768 - 24215804
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaatt 58  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  24215768 tatattacagggggtaaagacctattaacccttaatt 24215804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 37273422 - 37273454
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  37273422 tatattacagggggtaaagacctattaacccta 37273454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 8928845 - 8928803
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaaata 64  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  8928845 tatattacagggggtaaagacctattaaccctaaaataaaata 8928803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 28410944 - 28410911
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaa 55  Q
    ||||||||||||||||||||||||||||||||||    
T  28410944 tatattacaggggataaagacctattaaccctaa 28410911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 22604689 - 22604725
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaatt 58  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22604689 tatattacaggggttaaagacctattaaccctaaatt 22604725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 2472420 - 2472386
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  2472420 tatattacaggggttaaagacctattaaccctaaa 2472386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 35034322 - 35034352
Alignment:
Q  22 tatattacaggggataaagacctattaaccc 52  Q
    |||||||||||||||||||||||||||||||    
T  35034322 tatattacaggggataaagacctattaaccc 35034352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 42736848 - 42736878
Alignment:
Q  22 tatattacaggggataaagacctattaaccc 52  Q
    |||||||||||||||||||||||||||||||    
T  42736848 tatattacaggggataaagacctattaaccc 42736878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 43635865 - 43635831
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  43635865 tatattacagggggtaaagacctattaaccctaaa 43635831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 2359788 - 2359845
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 251  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  2359788 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 2359845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 9439429 - 9439461
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  9439429 tatattacagggggtaaagacctattaacccta 9439461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 24987638 - 24987606
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  24987638 tatattacagggggtaaagacctattaacccta 24987606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 26095844 - 26095812
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  26095844 tatattacagggggtaaagacctattaacccta 26095812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 32131930 - 32131962
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  32131930 tatattacagggggtaaagacctattaacccta 32131962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 49641137 - 49641085
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  49641137 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 49641085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 21029679 - 21029626
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    ||||||||| || | ||| |||||||||||||| ||||||||||||||||||||    
T  21029679 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 21029626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 6952929 - 6952960
Alignment:
Q  22 tatattacaggggataaagacctattaaccct 53  Q
    ||||||||||||||||||||||||||||||||    
T  6952929 tatattacaggggataaagacctattaaccct 6952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 27198174 - 27198143
Alignment:
Q  22 tatattacaggggataaagacctattaaccct 53  Q
    ||||||||||||||||||||||||||||||||    
T  27198174 tatattacaggggataaagacctattaaccct 27198143  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 27987553 - 27987587
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  27987553 tatattacagggggtaaagacctattaaccctaaa 27987587  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 28044855 - 28044889
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  28044855 tatattacagggggtaaagacctattaaccctaaa 28044889  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 34985349 - 34985383
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  34985349 tatattacagggggtaaagacctattaaccctaaa 34985383  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 12330363 - 12330330
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaa 55  Q
    ||||||||||||| ||||||||||||||||||||    
T  12330363 tatattacagggggtaaagacctattaaccctaa 12330330  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 15193144 - 15193196
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  15193144 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 15193196  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 27164685 - 27164725
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaattaaaa 62  Q
    ||||||||||||| |||||||||||||||| | ||||||||    
T  27164685 tatattacagggggtaaagacctattaacctttaattaaaa 27164725  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 42139696 - 42139749
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 247  Q
    ||||||||| || | ||| |||||||||||||| ||||||||||||||||||||    
T  42139696 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 42139749  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 11439824 - 11439860
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaatt 58  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11439824 tatattacaggagataaagacctattaaccctaaatt 11439860  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 31861521 - 31861490
Alignment:
Q  22 tatattacaggggataaagacctattaaccct 53  Q
    ||||||||||||||||||||||||||||||||    
T  31861521 tatattacaggggataaagacctattaaccct 31861490  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 22551552 - 22551518
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  22551552 tatattacagggggtaaagacctattaaccctaaa 22551518  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 26472138 - 26472188
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||| |||| ||| |||||||| ||||| |||||||||||||||||    
T  26472138 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaaca 26472188  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 38313200 - 38313170
Alignment:
Q  22 tatattacaggggataaagacctattaaccc 52  Q
    |||||||||||||||||||||||||||||||    
T  38313200 tatattacaggggataaagacctattaaccc 38313170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 26466863 - 26466806
Alignment:
Q  194 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 251  Q
    |||||||||||||| ||| |||||||| || || |||||||| ||||| |||||||||    
T  26466863 ttgtgttgagactccccaacaaaatgggagggttgaaagaaaacatcagcacatttta 26466806  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 10976774 - 10976806
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  10976774 tatattacagggggtaaagacctattaacccta 10976806  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 15061850 - 15061882
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  15061850 tatattacagggggtaaagacctattaacccta 15061882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 15615133 - 15615101
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  15615133 tatattacagggggtaaagacctattaacccta 15615101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 32144950 - 32144922
Alignment:
Q  25 attacaggggataaagacctattaaccct 53  Q
    |||||||||||||||||||||||||||||    
T  32144950 attacaggggataaagacctattaaccct 32144922  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 35798710 - 35798746
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaatt 58  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  35798710 tatattacaggggataaagacctactaacccttaatt 35798746  T

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Target: scaffold0246 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 15902 - 15870
Alignment:
Q  22 tatattacaggggataaagacctattaacccta 54  Q
    |||||||||||||||||||||||||||||||||    
T  15902 tatattacaggggataaagacctattaacccta 15870  T

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Target: scaffold0769 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 4178 - 4212
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  4178 tatattacagggggtaaagacctattaaccctaaa 4212  T

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Target: scaffold0450 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 7889 - 7855
Alignment:
Q  22 tatattacaggggataaagacctattaaccctaaa 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  7889 tatattacagggggtaaagacctattaaccctaaa 7855  T

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Target: scaffold0164 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 27210 - 27158
Alignment:
Q  192 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 244  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  27210 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 27158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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