View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17892_high_2 (Length: 206)

Name: NF17892_high_2
Description: NF17892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17892_high_2
NF17892_high_2
[»] chr4 (13 HSPs)
chr4 (1-113)||(34670489-34670601)
chr4 (114-192)||(34670342-34670420)
chr4 (15-108)||(873347-873440)
chr4 (6-91)||(37782029-37782114)
chr4 (3-94)||(39593890-39593980)
chr4 (1-103)||(5112398-5112499)
chr4 (7-85)||(24333978-24334056)
chr4 (6-103)||(5269035-5269131)
chr4 (7-85)||(3793932-3794010)
chr4 (6-103)||(10047547-10047643)
chr4 (7-103)||(3777716-3777811)
chr4 (7-103)||(16623128-16623222)
chr4 (7-103)||(16628707-16628801)
[»] chr1 (18 HSPs)
chr1 (1-113)||(8281479-8281591)
chr1 (3-78)||(918339-918413)
chr1 (3-78)||(15864726-15864801)
chr1 (6-75)||(2210624-2210694)
chr1 (5-103)||(47102674-47102771)
chr1 (6-85)||(29651979-29652058)
chr1 (6-103)||(16124349-16124445)
chr1 (1-70)||(32736864-32736932)
chr1 (1-103)||(11031309-11031410)
chr1 (5-85)||(40816668-40816748)
chr1 (7-85)||(13598567-13598645)
chr1 (3-71)||(37918820-37918888)
chr1 (43-74)||(6354273-6354304)
chr1 (1-56)||(35109418-35109473)
chr1 (5-103)||(47098660-47098757)
chr1 (8-85)||(9476430-9476507)
chr1 (10-113)||(25116524-25116629)
chr1 (6-42)||(17345414-17345450)
[»] chr2 (16 HSPs)
chr2 (5-109)||(28770602-28770706)
chr2 (1-91)||(3278161-3278251)
chr2 (5-85)||(14698861-14698941)
chr2 (6-103)||(21630111-21630207)
chr2 (7-103)||(34389018-34389113)
chr2 (1-91)||(41586397-41586487)
chr2 (6-103)||(17865371-17865467)
chr2 (6-103)||(33528459-33528555)
chr2 (7-103)||(10707087-10707182)
chr2 (5-85)||(31056208-31056288)
chr2 (6-104)||(18674234-18674331)
chr2 (8-85)||(34682185-34682262)
chr2 (7-51)||(13569496-13569540)
chr2 (7-103)||(23078306-23078400)
chr2 (6-70)||(27139968-27140032)
chr2 (5-85)||(33118300-33118380)
[»] chr8 (12 HSPs)
chr8 (1-113)||(31513156-31513268)
chr8 (4-68)||(6366669-6366733)
chr8 (6-85)||(6127389-6127468)
chr8 (6-69)||(24261945-24262008)
chr8 (5-103)||(3051285-3051382)
chr8 (5-85)||(19752246-19752325)
chr8 (5-41)||(5990457-5990493)
chr8 (31-75)||(33503703-33503747)
chr8 (8-103)||(4696443-4696537)
chr8 (7-85)||(19175606-19175683)
chr8 (7-85)||(26403081-26403159)
chr8 (5-85)||(7493025-7493105)
[»] chr5 (13 HSPs)
chr5 (3-90)||(30900030-30900116)
chr5 (3-75)||(34842766-34842837)
chr5 (7-85)||(10281919-10281997)
chr5 (1-103)||(11181667-11181768)
chr5 (5-103)||(28832422-28832519)
chr5 (5-103)||(31300430-31300527)
chr5 (5-75)||(42127272-42127342)
chr5 (1-49)||(2630392-2630440)
chr5 (7-85)||(17003811-17003889)
chr5 (5-103)||(19588910-19589007)
chr5 (6-66)||(3651666-3651729)
chr5 (6-71)||(17464209-17464274)
chr5 (6-103)||(24553362-24553458)
[»] chr3 (21 HSPs)
chr3 (6-113)||(5366135-5366244)
chr3 (7-103)||(8370313-8370407)
chr3 (7-85)||(3715843-3715921)
chr3 (5-106)||(8126795-8126895)
chr3 (5-49)||(1417368-1417412)
chr3 (7-103)||(40592606-40592701)
chr3 (4-51)||(21353726-21353773)
chr3 (6-103)||(47923728-47923824)
chr3 (5-85)||(18552726-18552806)
chr3 (7-103)||(36029261-36029355)
chr3 (6-85)||(1736145-1736224)
chr3 (5-84)||(25795945-25796024)
chr3 (6-85)||(48438382-48438461)
chr3 (5-103)||(3323515-3323612)
chr3 (7-85)||(35925646-35925723)
chr3 (5-51)||(40844815-40844861)
chr3 (46-75)||(10274588-10274617)
chr3 (6-103)||(21711389-21711484)
chr3 (1-75)||(25929246-25929322)
chr3 (5-85)||(3328198-3328278)
chr3 (3-74)||(44658345-44658417)
[»] chr6 (11 HSPs)
chr6 (6-103)||(24435806-24435902)
chr6 (5-97)||(31979678-31979768)
chr6 (5-103)||(5572078-5572174)
chr6 (2-102)||(31076772-31076871)
chr6 (6-85)||(18233013-18233091)
chr6 (6-85)||(21801196-21801275)
chr6 (6-97)||(33721399-33721489)
chr6 (1-91)||(99316-99406)
chr6 (1-108)||(1114931-1115040)
chr6 (6-74)||(4630120-4630187)
chr6 (5-85)||(31936742-31936820)
[»] chr7 (14 HSPs)
chr7 (12-83)||(761345-761416)
chr7 (5-103)||(20284254-20284351)
chr7 (5-103)||(33332285-33332382)
chr7 (5-103)||(23402848-23402945)
chr7 (7-85)||(29159972-29160050)
chr7 (5-103)||(46516140-46516237)
chr7 (5-78)||(3047419-3047492)
chr7 (6-103)||(9185009-9185105)
chr7 (6-103)||(9189842-9189938)
chr7 (6-75)||(49091829-49091898)
chr7 (5-85)||(2580555-2580635)
chr7 (5-85)||(4796520-4796600)
chr7 (6-85)||(56115-56194)
chr7 (5-83)||(2647551-2647629)
[»] scaffold0006 (2 HSPs)
scaffold0006 (7-85)||(5852-5930)
scaffold0006 (7-103)||(2661-2756)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34670601 - 34670489
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670601 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactca 34670502  T
Q  101 agaaaaaactctc 113  Q
    |||||||||||||    
T  34670501 agaaaaaactctc 34670489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 34670420 - 34670342
Alignment:
Q  114 caatcatgccaaggtttataagttcgtacacagtatgaatttacttatccactaaatcgtatcacgatctagacctttg 192  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  34670420 caatcatgccatggtttgtaagttcgtacacaatatgaatttacttatccactaaatcgtatcacgatctacacctttg 34670342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 873440 - 873347
Alignment:
Q  15 taagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaaaaaa 108  Q
    ||||||||||||| |||  || ||||| |||||| ||||||||||||||||||||| |||| || ||||||||||| | |||| ||||||||||    
T  873440 taagagaaaacacaaaatgaagctttttgatcctccctctaatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaaaaa 873347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 37782029 - 37782114
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgttt 91  Q
    |||||||| |||||||||||||||||  | |||||| ||| |||||  |||||| ||||||||||||||| || ||||||||||||    
T  37782029 aatgaatcttaagagaaaacactaaaagagactttttgattcttccaataatgaaatctcactacccaaggtgtttacaaatgttt 37782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 39593890 - 39593980
Alignment:
Q  3 cacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctc 94  Q
    ||||||||||||||||||||| |||| ||| || ||||| | || |||||||||||||||||||| |  |||| || |||||||||||||||    
T  39593890 cacaatgaatcctaagagaaaccactcaaggaagctttttggtcattcctctaatgagatctcac-attcaaggtgtttacaaatgtttctc 39593980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 5112398 - 5112499
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactca 100  Q
    ||||||||||||||||||||||||||  |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| ||    
T  5112398 ctcacaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaaccca 5112496  T
Q  101 aga 103  Q
    |||    
T  5112497 aga 5112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 24333978 - 24334056
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  24333978 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 5269131 - 5269035
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||| ||||| || |||| |||||||| |||| |||||    
T  5269131 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttac-aatgtttcccaacccaaga 5269035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 3794010 - 3793932
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||| |||||| |||| || ||||| ||||||| || |  ||| ||||||||||||||| || ||||||    
T  3794010 atgaatcctaagagcaaacacaaaaggaagctttttgatcctttctatggtgaaatctcactacccaaggtgtttacaa 3793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 10047547 - 10047643
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||| ||||||| |||| ||  |||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  10047547 aatgaatcctaagacaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 10047643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 3777716 - 3777811
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||| || |||| || ||||| |||| ||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  3777716 atgaatcctaagagaaaatacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 3777811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 16623222 - 16623128
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||| ||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  16623222 atgaatcctaaaagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 16623128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 16628801 - 16628707
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||| ||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  16628801 atgaatcctaaaagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 16628707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8281479 - 8281591
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactca 100  Q
    |||||||||||||| ||||||||||||||||| ||  ||||  || ||||||||||||||||||||||||||||| || ||||||||| ||| |||| ||    
T  8281479 ctcacaatgaatccaaagagaaaacactaaaggaagtttttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacaca 8281578  T
Q  101 agaaaaaactctc 113  Q
    |||||||||||||    
T  8281579 agaaaaaactctc 8281591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 918413 - 918339
Alignment:
Q  3 cacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatg 78  Q
    |||||||||||||||||||||||| ||| | || ||||| ||| ||||||||||||||||||||||||||||||||    
T  918413 cacaatgaatcctaagagaaaacaataatggaagctttt-gatgcttcctctaatgagatctcactacccaagatg 918339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 15864726 - 15864801
Alignment:
Q  3 cacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatg 78  Q
    ||||||||||||||||| |||||| || ||||| | ||| |||| || ||||||||||||||||||||||||||||    
T  15864726 cacaatgaatcctaagaaaaaacaatagagaaagcattttgatcatttctctaatgagatctcactacccaagatg 15864801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 2210624 - 2210694
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaac-ttttagatccttcctctaatgagatctcactacccaag 75  Q
    ||||||| ||||||||||||| |||||||||| |||| |||| || |||||||||||||||||||||||||    
T  2210624 aatgaattctaagagaaaacaataaagaaaacatttttgatcatttctctaatgagatctcactacccaag 2210694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 47102771 - 47102674
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||| ||||||| ||||||| ||||| |||||||||  | |||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  47102771 caatgaatcctaagaaaaaacacaaaagaaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47102674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 29651979 - 29652058
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  29651979 aatgaatcctaagagaaaacacaaaaggaaactttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 16124445 - 16124349
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  16124445 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 16124349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32736932 - 32736864
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactac 70  Q
    ||||||||||||||||||||||||| |||||| ||   ||| |||| |||||||||||||||||||||||    
T  32736932 ctcacaatgaatcctaagagaaaaccctaaaggaaggattt-gatcattcctctaatgagatctcactac 32736864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11031410 - 11031309
Alignment:
Q  1 ctcacaatgaatcctaagagaaaa-cactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactc 99  Q
    ||||||||| |||||||||||||| |||||||| || ||||| |||||||||  ||||||   ||||||||||| | || ||||||||||||| |||| |    
T  11031410 ctcacaatgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaa--ctcactacccacggtgtttacaaatgtttcccaaccc 11031313  T
Q  100 aaga 103  Q
    ||||    
T  11031312 aaga 11031309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 40816748 - 40816668
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  40816748 caatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 13598567 - 13598645
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  13598567 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 37918820 - 37918888
Alignment:
Q  3 cacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacc 71  Q
    ||||||||||||||||||||||||  | ||||||||||| | || || | ||||||||| |||||||||    
T  37918820 cacaatgaatcctaagagaaaacaagagagaaaactttttggtcatttccctaatgagaactcactacc 37918888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 6354304 - 6354273
Alignment:
Q  43 gatccttcctctaatgagatctcactacccaa 74  Q
    ||||||||||||||||||||||||||||||||    
T  6354304 gatccttcctctaatgagatctcactacccaa 6354273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35109473 - 35109418
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaa 56  Q
    |||||||||||||||| ||||||| ||||||| || |||||  |||||||||||||    
T  35109473 ctcacaatgaatcctacgagaaaatactaaaggaagcttttttatccttcctctaa 35109418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 47098757 - 47098660
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||| ||||||| ||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  47098757 caatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 9476430 - 9476507
Alignment:
Q  8 tgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||| ||||||||||||| |||| || ||||| ||||||||   |  ||| |||||||||||||||||| ||||||    
T  9476430 tgaatcttaagagaaaacacaaaaggaagctttttgatccttcaaatggtgaaatctcactacccaagatgtttacaa 9476507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 25116629 - 25116524
Alignment:
Q  10 aatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactaccc-aagatgcttacaaatgtttctcaactcaagaaa-aa 107  Q
    |||| |||||||||||||||||||||  ||||  |||||||   |||||| |||||||||||| ||  || ||||||||||||| |||| ||| ||| ||    
T  25116629 aatcttaagagaaaacactaaagaaatttttttaatccttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataa 25116530  T
Q  108 actctc 113  Q
    ||||||    
T  25116529 actctc 25116524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 17345450 - 17345414
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaactttta 42  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  17345450 aatgaatcttaagagaaaacacaaaagaaaactttta 17345414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 28770706 - 28770602
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaa 104  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||  ||||||||||||||||||||||| || ||||||||||||  ||||  |||||    
T  28770706 caatgaatcctaagagaaaacactaaaggaaacttttttatccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaa 28770607  T
Q  105 aaaac 109  Q
    |||||    
T  28770606 aaaac 28770602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3278161 - 3278251
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgttt 91  Q
    ||||||||||| ||||||||||||| |||||| ||  |||| ||||| |||| |||||| ||||||||| ||||| || ||||||||||||    
T  3278161 ctcacaatgaaccctaagagaaaacgctaaaggaagttttttgatccgtcctataatgaaatctcactatccaaggtgtttacaaatgttt 3278251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 14698941 - 14698861
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  || ||| ||||||||||||||| || ||||||    
T  14698941 caatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatagtgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 21630111 - 21630207
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  21630111 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 21630207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 34389018 - 34389113
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  34389018 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 34389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 41586487 - 41586397
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgttt 91  Q
    |||| |||| |||||||||||||||| |||||||||||||| ||| || |  ||| | | ||||||||||||||| || |||||| |||||    
T  41586487 ctcagaatggatcctaagagaaaacattaaagaaaactttttgattctcctcctagtaaaatctcactacccaaggtgtttacaactgttt 41586397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 17865371 - 17865467
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||||| |||| || ||||| ||||||||   |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  17865371 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttctatttgtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 17865467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 33528555 - 33528459
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||  || |||| |||||||| |||| |||||    
T  33528555 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaatgtgtttac-aatgtttcccaacccaaga 33528459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 10707182 - 10707087
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||| |||| || ||||| ||||||||   |  ||| |||| |||||||||| || |||| ||||||||||||| |||||    
T  10707182 atgaatcctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctaactacccaaggtgtttac-aatgtttctcaacccaaga 10707087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 31056208 - 31056288
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||| || ||||| ||||||| |  |  ||| ||||||||||||||| || ||||||    
T  31056208 caatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaa 31056288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 18674331 - 18674234
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaa 104  Q
    |||||||| |||||||||||| ||||| || ||||| ||||||| |  |||||| |||||||| | |||| || |||| |||||||| |||| ||||||    
T  18674331 aatgaatcataagagaaaacattaaaggaagctttttgatcctt-caataatgaaatctcactgctcaaggtgtttacgaatgtttcccaacccaagaa 18674234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 34682262 - 34682185
Alignment:
Q  8 tgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||||||||| |||| |||| ||| ||||||||   |  ||| ||||||||||||||| || ||||||    
T  34682262 tgaatcctaagagaaaacacaaaaggaaacattttgatccttcaagtggtgaaatctcactacccaaggtgtttacaa 34682185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 13569496 - 13569540
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcc 51  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||    
T  13569496 atgaatcctaagagaaaacacaaaaggaagctttttgatccttcc 13569540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 23078400 - 23078306
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||| |||||||||| |||| |||| || ||||| |||||||||  | |||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  23078400 atgaaccctaagagaagacacaaaaggaagctttt-gatccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 27139968 - 27140032
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactac 70  Q
    |||||||||||| |||||||| |||||||| ||||| | ||| |  ||| |||||||||||||||    
T  27139968 aatgaatcctaatagaaaacaataaagaaagctttttggtccgtgttcttatgagatctcactac 27140032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 33118300 - 33118380
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||| ||||||||||||| |||| || ||||| |||||||||  |   || ||||||||||||||| || ||||||    
T  33118300 caatgaatcttaagagaaaacacaaaaggaagctttttgatccttccaatggcgaaatctcactacccaaggtgtttacaa 33118380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31513268 - 31513156
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactca 100  Q
    |||||||||||||||||||||||||||||||||    ||||  |||||||||||||||| |||||||||  |||| || |||||||||||||||||| ||    
T  31513268 ctcacaatgaatcctaagagaaaacactaaagattttttttt-atccttcctctaatgaaatctcactattcaaggtgtttacaaatgtttctcaaccca 31513170  T
Q  101 agaaa-aaactctc 113  Q
    ||||| ||||||||    
T  31513169 agaaataaactctc 31513156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 6366669 - 6366733
Alignment:
Q  4 acaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcact 68  Q
    ||||||||||||||||||||||| |||| ||||| ||| |||||||  |||||||||||||||||    
T  6366669 acaatgaatcctaagagaaaacaataaaaaaaacgttttgatcctttttctaatgagatctcact 6366733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 6127389 - 6127468
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||||  |  ||| |||||||||||||| ||| ||||||    
T  6127389 aatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaaatgtttacaa 6127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 24261945 - 24262008
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcacta 69  Q
    |||||||| |||||||||||| ||||||||  |||| ||||||| |||||||||||||||||||    
T  24261945 aatgaatcataagagaaaacaataaagaaagtttttggatccttactctaatgagatctcacta 24262008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 3051285 - 3051382
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||| ||| |||| || ||||| |||| ||||  |  ||| |||||||||||||||||| |||| |||||||| ||||||||||    
T  3051285 caatgaatcctaagagaaagcacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaaga 3051382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 19752325 - 19752246
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  | |||| ||||||||||||||| || ||||||    
T  19752325 caatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 5990493 - 5990457
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaactttt 41  Q
    ||||||||||||||||||||||||||||||| |||||    
T  5990493 caatgaatcctaagagaaaacactaaagaaagctttt 5990457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 33503747 - 33503703
Alignment:
Q  31 agaaaacttttagatccttcctctaatgagatctcactacccaag 75  Q
    |||||||||||  || |||||||||||||||||||||||||||||    
T  33503747 agaaaacttttttattcttcctctaatgagatctcactacccaag 33503703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 4696537 - 4696443
Alignment:
Q  8 tgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||| |||| || ||||| |||| ||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  4696537 tgaatcctaagagaaaacacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 4696443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 19175683 - 19175606
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||| |||||||||| |||| |||| |||||||| |||||||||  || ||| ||||||||||||||| || ||||||    
T  19175683 atgaaccctaagagaagacacaaaaggaaactttt-gatccttccaatagtgaaatctcactacccaaggtgtttacaa 19175606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 26403159 - 26403081
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||| ||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  26403159 atgaatcataagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 7493105 - 7493025
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||| |||||||||| |||||||||||| || ||||| ||||||||   |  ||| ||||||||||||||| || ||||||    
T  7493105 caataaatcctaagaaaaaacactaaaggaagctttttgatccttctaattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 30900030 - 30900116
Alignment:
Q  3 cacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtt 90  Q
    ||||| |||||||| |||||||||||||||||| |||||  |||||||||||||||| ||||||||||||||| || ||| |||||||    
T  30900030 cacaaagaatccta-gagaaaacactaaagaaagcttttttatccttcctctaatgaaatctcactacccaaggtgtttataaatgtt 30900116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 34842766 - 34842837
Alignment:
Q  3 cacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaag 75  Q
    |||||||||| ||||||||| |||||||||||||| |||  | |||||| |||||||||||||||||||||||    
T  34842766 cacaatgaattctaagagaacacactaaagaaaac-tttgtaaccttcccctaatgagatctcactacccaag 34842837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 10281919 - 10281997
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  10281919 atgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11181768 - 11181667
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactca 100  Q
    ||||||||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| || |||||||||||| || |||| |||||||| |||| ||    
T  11181768 ctcacaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttcactacccaaggtgtttac-aatgtttcccaaccca 11181670  T
Q  101 aga 103  Q
    |||    
T  11181669 aga 11181667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 28832422 - 28832519
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  28832422 caatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 28832519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 31300527 - 31300430
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||| |||| || | ||| |||||||||  |  ||| ||||||||||||||| || |||| ||||||||||||| |||||    
T  31300527 caatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttctcaacccaaga 31300430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 42127342 - 42127272
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaag 75  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||  |  ||| |||||||||||||||    
T  42127342 caatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaag 42127272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2630392 - 2630440
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatcctt 49  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||||    
T  2630392 ctcacaatgaatcctaagagaaaacactaaaggaagctttttgatcctt 2630440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 17003889 - 17003811
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  17003889 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 19588910 - 19589007
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||| |||| ||  |||| |||||||||  |  ||| |||||||| ||||||||| |||| |||||||| |||| |||||    
T  19588910 caatgaatcctaagagaaaacacaaaaggaagatttttgatccttccaatggtgaaatctcactgcccaagatgtttac-aatgtttcccaacccaaga 19589007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 3651666 - 3651729
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagat---ccttcctctaatgagatctca 66  Q
    |||||||||||||| ||||||  | ||||||||||| |||   |||||||||||||||||||||    
T  3651666 aatgaatcctaagataaaacaagagagaaaactttttgatattccttcctctaatgagatctca 3651729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 17464209 - 17464274
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacc 71  Q
    |||||||  ||||| |||||| |||||||| ||||| |||| ||| ||||||||||||| ||||||    
T  17464209 aatgaattttaagacaaaacaataaagaaagctttttgatctttcatctaatgagatcttactacc 17464274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 24553458 - 24553362
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||| |||||||||||||| |||| || ||||| ||||||||   |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  24553458 aatgaattctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 24553362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 5366244 - 5366135
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcc-tctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaa 104  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||   || ||| |||| |||||||||| || ||||||||||||  |||||||||||    
T  5366244 aatgaatcctaagcgaaaacactaaaggaaacttttcgatccttccaattattgaaatcttactacccaaggtgtttacaaatgttttccaactcaagaa 5366145  T
Q  105 a-aaactctc 113  Q
    | ||||||||    
T  5366144 ataaactctc 5366135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 8370407 - 8370313
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||  |  ||| |||||||||||||||||| |||| |||||||| |||| |||||    
T  8370407 atgaatcctaagagaaaacacaaaaggaaactttt-gatccttccaatggtgaaatctcactacccaagatgtttac-aatgtttcccaacccaaga 8370313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 3715921 - 3715843
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  3715921 atgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 8126795 - 8126895
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaa 104  Q
    ||||||||| ||||||||||||| |||  || ||||| |||||||||  | |||| ||||||||||||||| || |||| |||||||| |||| ||||||    
T  8126795 caatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagaa 8126893  T
Q  105 aa 106  Q
    ||    
T  8126894 aa 8126895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 1417412 - 1417368
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatcctt 49  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||    
T  1417412 caatgaatcctaagagaaaacacaaaagaaaactttttgatcctt 1417368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 40592701 - 40592606
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  40592701 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 40592606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 21353726 - 21353773
Alignment:
Q  4 acaatgaatcctaagagaaaacactaaagaaaacttttagatccttcc 51  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||    
T  21353726 acaatgaatcttaagagaaaacactaaaggaaacttttggatccttcc 21353773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 47923824 - 47923728
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||| |||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  47923824 aatgaatcctacgagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47923728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 18552806 - 18552726
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||| ||  |||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  18552806 caatgaatcctaagagaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 36029261 - 36029355
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  36029261 atgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 36029355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 1736224 - 1736145
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||||||||||| |||  || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  1736224 aatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 1736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 25795945 - 25796024
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttaca 84  Q
    ||||||||||||||||||||||  |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||||    
T  25795945 caatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttaca 25796024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 48438382 - 48438461
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||||||||||| |||| || ||||| |||| ||||  |  ||| ||||||||||||||| || ||||||    
T  48438382 aatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaa 48438461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 3323612 - 3323515
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||| |||||||||||||| |||| || ||||| |||| ||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  3323612 caatgaattctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 3323515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 35925646 - 35925723
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  35925646 atgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaa 35925723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 40844815 - 40844861
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcc 51  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||    
T  40844815 caatgaatcctaagagaaaacacaaaaggaagctttttgatccttcc 40844861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 10274588 - 10274617
Alignment:
Q  46 ccttcctctaatgagatctcactacccaag 75  Q
    ||||||||||||||||||||||||||||||    
T  10274588 ccttcctctaatgagatctcactacccaag 10274617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 21711389 - 21711484
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| |||||||||| |||| || |||| |||||||| |||| |||||    
T  21711389 aatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactactcaaggtgtttac-aatgtttcccaacccaaga 21711484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25929322 - 25929246
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaaga--aaacttttagatccttcctctaatgagatctcactacccaag 75  Q
    ||||||||||||||||||||||||||| ||| |  || ||||| |||||||||  |  ||| |||||||||||||||    
T  25929322 ctcacaatgaatcctaagagaaaacacaaaaaaagaagctttttgatccttccgatggtgaaatctcactacccaag 25929246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 3328278 - 3328198
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||| ||||||||||||||||| |||| ||  |||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  3328278 caatgtatcctaagagaaaacacaaaaggaagttttttgatccttccaatgctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 44658417 - 44658345
Alignment:
Q  3 cacaatgaatcctaagagaaaacactaaagaaa-acttttagatccttcctctaatgagatctcactacccaa 74  Q
    |||||| ||||| ||||||||| | |||||||| | ||||  |||||| ||||||||||||||||| ||||||    
T  44658417 cacaattaatcccaagagaaaataataaagaaagatttttttatcctttctctaatgagatctcaccacccaa 44658345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 24435902 - 24435806
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| ||||||||||    
T  24435902 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaaga 24435806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 31979678 - 31979768
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaac 97  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||||||||    
T  31979678 caatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttctcaac 31979768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 5572174 - 5572078
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||| |||| || ||||| |||| ||||  || ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  5572174 caatgaatcctaagagaaaacacaaaaggaagctttt-gatcattccaatagtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 5572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 31076871 - 31076772
Alignment:
Q  2 tcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaa 101  Q
    |||| |||||||||||||||||||||||||||||  |||| |||| ||||  |  ||| |||||| |||| ||| || ||||||| |||||||||| |||    
T  31076871 tcactatgaatcctaagagaaaacactaaagaaatttttttgatcattccaatggtgaaatctcaatacctaaggtgtttacaaa-gtttctcaacccaa 31076773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 18233013 - 18233091
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  18233013 aatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 21801275 - 21801196
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||| ||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  21801275 aatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 33721489 - 33721399
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaac 97  Q
    |||||||||||||||||||||||||||  | |||||  ||| ||||  |||||| ||||||||| | ||| || ||||||||||||| ||||    
T  33721489 aatgaatcctaagagaaaacactaaagggagctttttcatcattccaataatgaaatctcacta-caaaggtgtttacaaatgtttcccaac 33721399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 99316 - 99406
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgttt 91  Q
    |||||||||||||||| ||||||| || |||| || |||||  ||| || |||||||||||| | |||||| ||| || ||||| ||||||    
T  99316 ctcacaatgaatcctatgagaaaataccaaaggaagctttttaatcatttctctaatgagatataactacctaaggtgtttacagatgttt 99406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1115040 - 1114931
Alignment:
Q  1 ctcacaatgaatcctaagagaaaacactaaagaaaacttttagatc--cttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaact 98  Q
    ||||||||||||  ||||||||||||| |||| ||||||||   ||  ||||| ||||||||||||||| | ||| | || | ||||||||||| ||||     
T  1115040 ctcacaatgaatattaagagaaaacacaaaaggaaacttttttttctccttcccctaatgagatctcaccatccatgttgttaacaaatgtttcccaacc 1114941  T
Q  99 caagaaaaaa 108  Q
     |||||||||    
T  1114940 aaagaaaaaa 1114931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 4630120 - 4630187
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaa 74  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||    
T  4630120 aatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaa 4630187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 31936742 - 31936820
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  31936742 caatgaatcctaagagaaaacac-aaag-aagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 761345 - 761416
Alignment:
Q  12 tcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttac 83  Q
    |||||||||  |||||||||  |||||||| |||||||||||||||||||||||||||| |||  |||||||    
T  761345 tcctaagaggtaacactaaatgaaactttttgatccttcctctaatgagatctcactactcaaagtgcttac 761416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 20284254 - 20284351
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  20284254 caatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 20284351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 33332382 - 33332285
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    |||||| |||||||||||||||| || | || ||||| |||||||||  |  ||| |||||||||||||||||| |||| ||||||||||||| |||||    
T  33332382 caatgattcctaagagaaaacacaaagggaagctttttgatccttccaatggtgaaatctcactacccaagatgtttac-aatgtttctcaacccaaga 33332285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 23402945 - 23402848
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||| |||| || ||||| |||| ||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  23402945 caatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23402848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 29159972 - 29160050
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  29159972 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 46516237 - 46516140
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||| ||||||||||||| |||  || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| ||||||||||    
T  46516237 caatgaatcttaagagaaaacacaaaatgaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaaga 46516140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 3047419 - 3047492
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatg 78  Q
    ||||||||| ||||| ||||||| |||| || ||||| |||||||||  | |||| ||||||||||||||||||    
T  3047419 caatgaatcttaagataaaacacaaaaggaagctttttgatccttccaatgatgaaatctcactacccaagatg 3047492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 9185105 - 9185009
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||  ||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  9185105 aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9185009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 9189938 - 9189842
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||||||||||||  ||| || ||||| |||||||||  |  ||| ||||||||||||||| || |||| |||||||| |||| |||||    
T  9189938 aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9189842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 49091829 - 49091898
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaag 75  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| |||||||||||||||    
T  49091829 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaag 49091898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 2580555 - 2580635
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||| || ||||| ||||||| |  |  ||| ||||||||||||||| || ||||||    
T  2580555 caatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 4796600 - 4796520
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||||| |||  || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  4796600 caatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 56115 - 56194
Alignment:
Q  6 aatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    |||||||||||||||||||||| |||  || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  56115 aatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 2647629 - 2647551
Alignment:
Q  5 caatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttac 83  Q
    ||||||||||||||||||||||| |||  ||  |||| |||||||||  |  ||| ||||||||||||||| |||||||    
T  2647629 caatgaatcctaagagaaaacacaaaatgaagttttttgatccttccaatggtgaaatctcactacccaaggtgcttac 2647551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 5852 - 5930
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 85  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||  |  ||| ||||||||||||||| || ||||||    
T  5852 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 2661 - 2756
Alignment:
Q  7 atgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaaga 103  Q
    ||||||||||||| ||||||| |||| || ||||| |||||||||  |  ||| |||||||||| |||| || |||| |||||||| |||| |||||    
T  2661 atgaatcctaagataaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacgcaaggtgtttac-aatgtttcccaacccaaga 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University