View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_high_1 (Length: 604)
Name: NF17893_high_1
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 34185467 - 34185859
Alignment:
| Q |
1 |
ggtgaggtgacaaatcgtggatatttcaaatgagttttcacaattttattgtatgcaaaaagatatctatcaccattctccaatgaaaatgatctatttt |
100 |
Q |
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| T |
34185467 |
ggtgaggtgacaaatcgtggatatttcaaatgagttttcacaattttattgtatgcaaaaagatatctatcaccattctccaatgaaaatgatctatttt |
34185566 |
T |
|
| Q |
101 |
gggtctatatgtttgacaagagaggggttaatataacatatctagataaatcttgtaagaaaacaaacataaact---gacaaatacttgcaaaattttc |
197 |
Q |
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| T |
34185567 |
gggtctatatgtttgacaagagaggggttaatataacatatctagataaatcttgtaagaaaacaaacataaacttatgacaaatacttgcaaaattttc |
34185666 |
T |
|
| Q |
198 |
tgcccaatttatgggattgtgtcgatgatattgtttatgttcctgtgaattttaattgttgtttccacgaagtagcagttttctttttattgatagataa |
297 |
Q |
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| T |
34185667 |
tgcccaatttatgggattgtgtcgatgatattgtttatgttcctgtgaattttaattgttgtttccacgaagtagcagttttctttttgttgatagataa |
34185766 |
T |
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| Q |
298 |
aatgacaagagtcattgaaaacttaaacgcataagtgaagcagtcggagttcaaacccaagtca-cgagatggttgttgtactcttttaataa |
389 |
Q |
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| T |
34185767 |
aatgacaagagtcattgaaaacttaaacgcataagtgaagcagtcggagttcaaaccccagtcattgagatggttgttgtactcttttaataa |
34185859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 479 - 588
Target Start/End: Original strand, 34185946 - 34186055
Alignment:
| Q |
479 |
gtctggtgtgctgtatatatgttattacaaaaatgtaagtaagccaagcaacgaggaaataaatctataaattacattctccttcctcttgttaatcacc |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34185946 |
gtctggtgtgctgtatatatgttattacaaaaatgtaagtaagccaagcaacgaggaaataaatctataaattacattctccttcctcttgttaatcacc |
34186045 |
T |
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| Q |
579 |
attcattggt |
588 |
Q |
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|||||||||| |
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| T |
34186046 |
attcattggt |
34186055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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