View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_high_3 (Length: 413)
Name: NF17893_high_3
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 1529321 - 1529664
Alignment:
| Q |
21 |
agtctgccgatgcatctacctaaggcatatggatgattgcattaaatagcgtctcacctattctttgtttccaatgtgcctcccatgccactatctacat |
120 |
Q |
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| T |
1529321 |
agtctgccgatgcatctacctaaggcatatggatgattgcattaaatagcgtctcacctattctttgtttccaatgtgcctcccatgccactatctacat |
1529420 |
T |
|
| Q |
121 |
gtatgttctgttaacaacttgctttgccttttccaatgcattatagatcacattcttttactctcacctattctcgaaattctgcactacagatctacaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1529421 |
gtatgttctgttaacaacttgctttgccttttccaatgcattatagatcacattcttttactctcacctattctcaaaattctgcactacagatctacaa |
1529520 |
T |
|
| Q |
221 |
tctcttctccacacaaatttcatctctcatagaacagcaacccattcacccttatcgcctctattttcggcactatctacactgtttcgccatctaaaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1529521 |
tctcttctccacacaaatttcatctctcatagaacagcaacccattcacccttatcgcctctattttcggcactatctacactgtttcgccatctaaaaa |
1529620 |
T |
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| Q |
321 |
tgtacagataaaacctcgccgggacggccatgttcggcataacg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1529621 |
tgtacagataaaacctcgccgggacggccatgttcggcataacg |
1529664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 26841367 - 26841426
Alignment:
| Q |
299 |
acactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggc |
358 |
Q |
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| T |
26841367 |
acactgtttcgccatctaaaaatgtacagataaaacctcgccggaacagccatgttcggc |
26841426 |
T |
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