View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_high_7 (Length: 294)
Name: NF17893_high_7
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_high_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 28000296 - 28000603
Alignment:
| Q |
2 |
atacgacactacgcacaaaatcgtttctattaagtaagaaacttttacattgagatacaagatcaataaaacttcattccatttgga------------- |
88 |
Q |
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| T |
28000296 |
atacgacactacgcacaaagtcgtttctattaagtaagaaacttttacattgagatacaagatcaataaaacttcattccatttggagcattgttaagtg |
28000395 |
T |
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| Q |
89 |
--gcattgttagtggcaagagcatcaaataaagttttggaatcattttcaaacaaaacaacatgcattccatttgatatgaccactttaaaagttttcgg |
186 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28000396 |
gagcattgttggtggcgagagcatcaaataaagttttggaatcagtttcaaacaaaacaacatgcattccatttgatatgaccactttaaaagttttcag |
28000495 |
T |
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| Q |
187 |
taagtctaaagtttcggcttctagaacagttgtagtagagaaagaataatctaatttacctaacaaaaataagtttgtagagtctcaaaaacacaaatct |
286 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28000496 |
taagcctaaagtttcggcttctagaacggttgtagtagagaaagaataatctaatttacctaacaaaaataagtttgtagagtctcaaaaacacaaatct |
28000595 |
T |
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| Q |
287 |
taccccat |
294 |
Q |
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|||||||| |
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| T |
28000596 |
taccccat |
28000603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 91 - 281
Target Start/End: Original strand, 27950127 - 27950316
Alignment:
| Q |
91 |
attgttagtggcaagagcatcaaataaagttttggaatcattttcaaacaaaacaacatgcattccatttgatatgaccactttaaaagttttcggtaag |
190 |
Q |
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| T |
27950127 |
attgttggtggtgagaccatcaaataaagttctggaatcattttcaaacaaaacaacatgcatttcatttgatatgaccgctttgatagtttccagtaag |
27950226 |
T |
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| Q |
191 |
tctaaagtttcggcttctagaacagttgtagtagagaaagaataatctaatttacctaacaaaaataagtttgtagagtctcaaaaacaca |
281 |
Q |
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| T |
27950227 |
cctaaagttccggcttctagaacggttgcagtagagagagaataatc-agattacctaacaaaaataagtttgtagagtctcaaaaacaca |
27950316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 27949623 - 27949680
Alignment:
| Q |
5 |
cgacactacgcacaaaatcgtttctattaagtaagaaacttttacattgagatacaag |
62 |
Q |
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| T |
27949623 |
cgacactacatacaaagtcgtttctattaagtaagaaacttctacattaagatacaag |
27949680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 2624678 - 2624765
Alignment:
| Q |
89 |
gcattgttagtggcaagagcatcaaataaagttttggaatcattttcaaacaaaacaacatgcattccatttgatatgaccactttaa |
176 |
Q |
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| T |
2624678 |
gcattgttggtggcaagagcaagagataatgttttgaaatcaatttcaaacaaaacaacatacattctgtttgatatggtcactttaa |
2624765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 2262727 - 2262655
Alignment:
| Q |
104 |
agagcatcaaataaagttttggaatcattttcaaacaaaacaacatgcattccatttgatatgaccactttaa |
176 |
Q |
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| T |
2262727 |
agagcatcaaataaaacttttgaatcactttcaaacaaatcatcatgcatttcatttgaaatagccactttaa |
2262655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 4262874 - 4262811
Alignment:
| Q |
107 |
gcatcaaataaagttttggaatcattttcaaacaaaacaacatgcattccatttgatatgacca |
170 |
Q |
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| T |
4262874 |
gcatcagataaaattttaaaatcattgttaaacaaaacaacattcattctatttgatatgacca |
4262811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 898915 - 898963
Alignment:
| Q |
126 |
aatcattttcaaacaaaacaacatgcattccatttgatatgaccacttt |
174 |
Q |
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| T |
898915 |
aatcaatttcaaacagaacaatatgcattccatttgaaatgatcacttt |
898963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 48097409 - 48097451
Alignment:
| Q |
132 |
tttcaaacaaaacaacatgcattccatttgatatgaccacttt |
174 |
Q |
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| T |
48097409 |
tttcaaacaaaacaacattcattcagtttgatatgaccacttt |
48097451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 5691745 - 5691657
Alignment:
| Q |
86 |
ggagcattgttagtggcaagagcatcaaataaagttttggaatcattttcaaacaaaacaacatgcattccatttgatatgaccacttt |
174 |
Q |
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| T |
5691745 |
ggagcattggaagtgacaagagctttagataatgatttgtaataagtttcaaacaaaacaacgtacattccgtttgatatggccacttt |
5691657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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