View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_low_10 (Length: 250)
Name: NF17893_low_10
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 27999919 - 27999687
Alignment:
| Q |
1 |
ccaagattaattcggggaccttgaacatacatatatatttgcatgagtcagaaccaannnnnnngtttcttttgctaataatagtcagaatcaaatcttt |
100 |
Q |
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| T |
27999919 |
ccaagattaattcggggaccttgaccatacatatatatttgcatgagtcagagccaatttttttgtttcttttgctaataatagtcagaaccaaatcttt |
27999820 |
T |
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| Q |
101 |
gaataaagagatactaaaaccattgaaatgaaaattcaaagcaagagagaacttgattttcaatcaaatagggtattaaatattaaatctcccccagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27999819 |
gaataaagagatactaaaaccattgaaatgaaaattcaaagcaagagagaacttgattttcaatcaaatagggtattaaatattaaatctccccaagaaa |
27999720 |
T |
|
| Q |
201 |
agtttgtatcaacgatttgttctctctctgaat |
233 |
Q |
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| T |
27999719 |
agtttgtatcaacgacttgttctctctctgaat |
27999687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 27948380 - 27948229
Alignment:
| Q |
79 |
taatagtca-gaatcaaatctttgaataaagagatactaaaaccattgaaatgaaaattcaaagcaagagagaacttgattttcaatcaaatagggtatt |
177 |
Q |
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||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||| |
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| T |
27948380 |
taatagtcaagaaccaaatctttgaata--gagatactaaaaccattgaaatgaaaattcaaagcaagagaggacttgattttcaatcttatagtgcatt |
27948283 |
T |
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| Q |
178 |
aaatattaaatctcccccagaaaagtttgtatcaacgatttgttctctctctga |
231 |
Q |
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||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |
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| T |
27948282 |
aaatattaaatctccccaagagaagtttgtatcaacgacttgttctctctctga |
27948229 |
T |
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