View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_low_11 (Length: 249)
Name: NF17893_low_11
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3285951 - 3286192
Alignment:
| Q |
1 |
atggaatatgattggacattgtatgtgcatgcgaaaatagatctatgactaggcattagaatctgcacattatttagtcaatattcgtttgataaaaagt |
100 |
Q |
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| T |
3285951 |
atggaatatgattggacattgtatgtgcatgcgaaaatagatctatgactaggcattagaatctacacattatttagtcaatatccgtttgataaaaagt |
3286050 |
T |
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| Q |
101 |
tgatgtctcacactttctaaatcaaaaactcgttttgtattgcacattg---nnnnnnncattaataattgaattaaaccaaagacaaaacaaaatatga |
197 |
Q |
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| T |
3286051 |
tgatgtctcacactttttaaataaaaagctcgttttgaattgcacattgaaaaaaaaaacattaacaattgaattaaaccaaagacaaaacaaaatatga |
3286150 |
T |
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| Q |
198 |
tttatatataatcagtcagataaatatctacatgaaattcat |
239 |
Q |
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| T |
3286151 |
tttatatataataagtcagataagtatctacatgaaattcat |
3286192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 19462276 - 19462245
Alignment:
| Q |
91 |
gataaaaagttgatgtctcacactttctaaat |
122 |
Q |
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| T |
19462276 |
gataaaaagttgatgtctcacactttctaaat |
19462245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 23083851 - 23083884
Alignment:
| Q |
94 |
aaaaagttgatgtctcacactttctaaatcaaaa |
127 |
Q |
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| T |
23083851 |
aaaaagtcgatgtctcacactttctaaatcaaaa |
23083884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 22784185 - 22784153
Alignment:
| Q |
95 |
aaaagttgatgtctcacactttctaaatcaaaa |
127 |
Q |
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| T |
22784185 |
aaaagttgatgtctaacactttctaaatcaaaa |
22784153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 32460235 - 32460199
Alignment:
| Q |
91 |
gataaaaagttgatgtctcacactttctaaatcaaaa |
127 |
Q |
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| T |
32460235 |
gataaaaagttgatgtcttgcactttctaaatcaaaa |
32460199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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