View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_low_12 (Length: 248)
Name: NF17893_low_12
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 4130731 - 4130871
Alignment:
| Q |
92 |
gagtaatgtatattttgatgacatgaaaatgatttgtaagtgagaattcacttagatagggtcatattatcaactcagttcacacaaaaacatcacactt |
191 |
Q |
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| T |
4130731 |
gagtaatgtatatcttgatgacatgaaaatgatttctaagtgagaattcacttagatagggtcatattatcaactcagttcacacataaacatcacactc |
4130830 |
T |
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| Q |
192 |
atcacattatctatttatatacaatggtgatctatagtaag |
232 |
Q |
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| T |
4130831 |
atcacattatctatttatatacaatggtgatctatagtaag |
4130871 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4130640 - 4130700
Alignment:
| Q |
1 |
attcaacacgccaaagataggctcaaaaggggaagtgtttatataagtaatgtttacatca |
61 |
Q |
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| T |
4130640 |
attcaacacgccaaagataggctcaaaaggggaagtgtttatataagtaatgtttacatca |
4130700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 17549998 - 17549970
Alignment:
| Q |
95 |
taatgtatattttgatgacatgaaaatga |
123 |
Q |
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| T |
17549998 |
taatgtatattttgatgacatgaaaatga |
17549970 |
T |
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