View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_low_15 (Length: 213)
Name: NF17893_low_15
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1529895 - 1529683
Alignment:
| Q |
1 |
tcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacagcaaagtaatgaaagaa |
100 |
Q |
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| T |
1529895 |
tcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacagcaaagtaatgaaagaa |
1529796 |
T |
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| Q |
101 |
tagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctcagacgaagcaaaaaactgaatgaaatgaaga |
200 |
Q |
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| T |
1529795 |
tagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctcagacgaagcaaaaaactgaatgaaatgaaga |
1529696 |
T |
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| Q |
201 |
aacgtgaaagaaa |
213 |
Q |
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| T |
1529695 |
aacgtgaaagaaa |
1529683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26841670 - 26841454
Alignment:
| Q |
1 |
tcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacag------caaagtaatg |
94 |
Q |
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| T |
26841670 |
tcaatattagaagatttcatataacccaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacaggcacaacaaagtaacg |
26841571 |
T |
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| Q |
95 |
aaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctcagacgaagcaaaaaactgaatgaaa |
194 |
Q |
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| T |
26841570 |
aaagaatagactcgcctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctccgacgaagcaaaaaactgaatgaaa |
26841471 |
T |
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| Q |
195 |
tgaagaaacgtgaaaga |
211 |
Q |
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| T |
26841470 |
tgaagaaacgtgaaaga |
26841454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 22476823 - 22476949
Alignment:
| Q |
1 |
tcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacagcaaagtaatgaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |
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| T |
22476823 |
tcaatattagaagatttcatataaccaaataattagaaggctgcaattttaaaattaatttagggatttctcatgttgtaacaacaaagtaatgaaagaa |
22476922 |
T |
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| Q |
101 |
tagactcacctttgaagcaaagagcaa |
127 |
Q |
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| T |
22476923 |
tagactcacctttgaagcaaagagcaa |
22476949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 22476945 - 22476980
Alignment:
| Q |
176 |
agcaaaaaactgaatgaaatgaagaaacgtgaaaga |
211 |
Q |
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| T |
22476945 |
agcaaaaaactgaatgaaatgaagaaacgtgaaaga |
22476980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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