View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17893_low_3 (Length: 479)

Name: NF17893_low_3
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17893_low_3
NF17893_low_3
[»] chr6 (9 HSPs)
chr6 (1-463)||(785180-785653)
chr6 (211-298)||(1334687-1334774)
chr6 (209-298)||(26402624-26402713)
chr6 (205-289)||(32225330-32225414)
chr6 (205-280)||(26178527-26178602)
chr6 (263-298)||(6751880-6751915)
chr6 (205-240)||(19369889-19369924)
chr6 (203-254)||(34197186-34197237)
chr6 (265-298)||(19369843-19369876)
[»] chr2 (4 HSPs)
chr2 (203-298)||(43585943-43586038)
chr2 (203-255)||(14450705-14450757)
chr2 (210-254)||(8300180-8300224)
chr2 (209-253)||(13501036-13501080)
[»] chr7 (5 HSPs)
chr7 (205-298)||(25956471-25956563)
chr7 (217-298)||(1885599-1885675)
chr7 (205-298)||(5937361-5937454)
chr7 (208-254)||(48963995-48964041)
chr7 (208-240)||(10702456-10702488)
[»] scaffold0314 (1 HSPs)
scaffold0314 (209-298)||(8974-9061)
[»] chr3 (1 HSPs)
chr3 (206-298)||(34834869-34834960)
[»] chr4 (10 HSPs)
chr4 (208-254)||(39619045-39619091)
chr4 (208-298)||(13307903-13307993)
chr4 (203-253)||(37496786-37496836)
chr4 (205-254)||(5998886-5998935)
chr4 (217-298)||(44362692-44362773)
chr4 (267-298)||(11797630-11797661)
chr4 (216-254)||(21152895-21152933)
chr4 (203-239)||(4790785-4790821)
chr4 (205-273)||(10635053-10635121)
chr4 (321-353)||(24343447-24343479)
[»] scaffold0122 (1 HSPs)
scaffold0122 (205-259)||(10247-10301)
[»] chr1 (3 HSPs)
chr1 (208-254)||(18950996-18951041)
chr1 (264-297)||(7888122-7888155)
chr1 (320-352)||(23439942-23439974)
[»] chr5 (4 HSPs)
chr5 (206-246)||(9031879-9031919)
chr5 (208-275)||(21319877-21319944)
chr5 (205-298)||(7621170-7621268)
chr5 (263-300)||(8420051-8420088)
[»] scaffold0504 (1 HSPs)
scaffold0504 (203-254)||(8640-8691)
[»] chr8 (3 HSPs)
chr8 (265-298)||(10002163-10002196)
chr8 (266-298)||(4298887-4298919)
chr8 (266-294)||(24295138-24295166)


Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 785180 - 785653
Alignment:
Q  1 aaaagtaattctccaaaatgtttgaataatatcatttcaaagtcatctaatagacagcaactcaatctagacatcaacatcaaatttatttctccacaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785180 aaaagtaattctccaaaatgtttgaataatatcatttcaaagtcatctaatagacagcaactcaatctagacatcaacatcaaatttatttctccacaac 785279  T
Q  101 gcaaacagttgcagttaaaactatgtgtatgtttagcatcatgattatttacctaaactaagttgaaccagtgtaattttgtaaaagttacactatgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785280 gcaaacagttgcagttaaaactatgtgtatgtttagcatcatgattatttacctaaactaagttgaaccagtgtaattttgtaaaagttacactatgtaa 785379  T
Q  201 ccacctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcat-----------atccgacaccgacacttgtgattacatt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |  |||||||||||||||||||||||||    
T  785380 ccacctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgacaccgacacgacaccgacacttgtgattacatt 785479  T
Q  290 aaattatgttannnnnnngaaaattttatccgtgtccgtgtcagtgtccgtgcttcataggtaaccactgttatttcaaaaggctaacaaataggtacaa 389  Q
     |||||||| |       |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785480 gaattatgtcattattttgaaaattttatcagtgtccgtgtctgtgtccgtgcttcataggtaaccactgttatttcaaaaggctaacaaataggtacaa 785579  T
Q  390 gaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaattatcattttttgcttggttat 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785580 gaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaattatcattttttgcttggttat 785653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 1334774 - 1334687
Alignment:
Q  211 tgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| | | ||||||||||| ||||||||||||| ||||||||    
T  1334774 tgcacggacacttctgattgaaggtgtgtcctggtgttcgacacgcatcgtgttcgacaccgacatttgtgattacattgaattatgt 1334687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 26402624 - 26402713
Alignment:
Q  209 gttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    |||||||||||||||||||||||||  |||||  ||||||| |||   ||| | ||||||||||||||||||||||||| | ||||||||    
T  26402624 gttgcacggacacttctgattgaagaagtgtctcggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgt 26402713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 32225330 - 32225414
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacatt 289  Q
    ||||| |||||  ||||| |||||||||||||||||| |||||||||||    || | |||||||||||||| ||||||||||||    
T  32225330 ctctgctgcacaaacactcctgattgaaggtgtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacatt 32225414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 26178602 - 26178527
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgt 280  Q
    ||||| ||||||||||||||||||||||||| ||||| | ||||||||||   || | ||||||||||| ||||||    
T  26178602 ctctgatgcacggacacttctgattgaaggtatgtcccgatgtccgacacgtgtcgtgtccgacaccgatacttgt 26178527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 6751880 - 6751915
Alignment:
Q  263 tccgacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6751880 tccgacaccgacacttgtgattacattgaattatgt 6751915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 19369924 - 19369889
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtc 240  Q
    |||||||||||||||||||||||||||||| |||||    
T  19369924 ctctgttgcacggacacttctgattgaaggcgtgtc 19369889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 34197237 - 34197186
Alignment:
Q  203 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    |||||| |||||| |||||||||  |||||||||||||||||| ||||||||    
T  34197237 acctctattgcactgacacttctagttgaaggtgtgtcctggtctccgacac 34197186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 19369876 - 19369843
Alignment:
Q  265 cgacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||||||||||||||||||| ||||||||    
T  19369876 cgacaccgacacttgtgattacattgaattatgt 19369843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 298
Target Start/End: Original strand, 43585943 - 43586038
Alignment:
Q  203 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||| |||||  ||| | ||||||||||||||||||||||||||| ||||||||    
T  43585943 acctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 43586038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 14450705 - 14450757
Alignment:
Q  203 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacaca 255  Q
    |||||||||||||||||||||||||||||||  |||||| |||||| ||||||    
T  14450705 acctctgttgcacggacacttctgattgaagacgtgtcccggtgtctgacaca 14450757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 8300180 - 8300224
Alignment:
Q  210 ttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||    
T  8300180 ttgcatggacacttctgattgaaggcgtgtcccggtgtccaacac 8300224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 13501036 - 13501080
Alignment:
Q  209 gttgcacggacacttctgattgaaggtgtgtcctggtgtccgaca 253  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||    
T  13501036 gttgcaccgacacttctgattgaaggtgtgtcttgacgtccgaca 13501080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 25956563 - 25956471
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    |||| ||||||||||||||||||||||||| |||||| | |||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  25956563 ctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 25956471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 1885675 - 1885599
Alignment:
Q  217 gacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    |||||||||||||||| ||||||||||||||||||||| || ||    ||||||||||||||||||||||||| ||||||||    
T  1885675 gacacttctgattgaacgtgtgtcctggtgtccgacac-caaca----cgacaccgacacttgtgattacattgaattatgt 1885599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 5937361 - 5937454
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    |||| |||||||||||||||  |||||||| || | |||||||||||||   ||| |  ||||||| |||||||||||||||||| ||||||||    
T  5937361 ctctattgcacggacacttcatattgaaggcgtattctggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgt 5937454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 48963995 - 48964041
Alignment:
Q  208 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    ||||||| |||||||||||||||||||| ||||| ||||| ||||||    
T  48963995 tgttgcatggacacttctgattgaaggtatgtcccggtgttcgacac 48964041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 10702456 - 10702488
Alignment:
Q  208 tgttgcacggacacttctgattgaaggtgtgtc 240  Q
    |||||||| ||||||||||||||||||||||||    
T  10702456 tgttgcaccgacacttctgattgaaggtgtgtc 10702488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 9061 - 8974
Alignment:
Q  209 gttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||||  | ||  ||||||||||||||||||||| || ||||||||    
T  9061 gttgcacagacacttctgattgaaggcgtgtcccggtgtccgacacacacgacat--gacaccgacacttgtgattacgttgaattatgt 8974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 34834869 - 34834960
Alignment:
Q  206 tctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||   ||||  ||||||||||| ||| ||||||| ||| ||||||||    
T  34834869 tctgttgcacggacacttctgattgaaggcgtgtcccggtgtccgacatgtatcaagtccgacaccgatactcgtgatta-attgaattatgt 34834960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 39619045 - 39619091
Alignment:
Q  208 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  39619045 tgttgcacggacacttctgattgaaggtgtgtcccggtgtccgacac 39619091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 13307993 - 13307903
Alignment:
Q  208 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||  |||||||||||||||||  |||| ||||||| |||||   || | ||||||||| ||||||||||||||||| ||||||||    
T  13307993 tgttgcaccaacacttctgattgaaggcatgtcatggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgt 13307903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 37496836 - 37496786
Alignment:
Q  203 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgaca 253  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  37496836 acctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgaca 37496786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 5998935 - 5998886
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  5998935 ctctgttgcaccgacacttatgattgaaggtgtgtccaggtgtccgacac 5998886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 44362773 - 44362692
Alignment:
Q  217 gacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||||||| ||||||||||| | ||||||| ||   || | || |||||| ||||||||||||||||||||||||||    
T  44362773 gacacttctgatttaaggtgtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgt 44362692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 298
Target Start/End: Original strand, 11797630 - 11797661
Alignment:
Q  267 acaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||||||||||||||||||||||||||    
T  11797630 acaccgacacttgtgattacattaaattatgt 11797661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 21152895 - 21152933
Alignment:
Q  216 ggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  21152895 ggacacttctgattgaaggagtgtcctgatgtccgacac 21152933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 4790821 - 4790785
Alignment:
Q  203 acctctgttgcacggacacttctgattgaaggtgtgt 239  Q
    |||||||| |||| |||||||||||||||||||||||    
T  4790821 acctctgtagcaccgacacttctgattgaaggtgtgt 4790785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 10635121 - 10635053
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccga 273  Q
    |||||||||||| || |||||||||||||   ||||| ||||||||||||  ||||| || ||||||||    
T  10635121 ctctgttgcacgaactcttctgattgaagagttgtccgggtgtccgacacgtatcatgtctgacaccga 10635053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 24343479 - 24343447
Alignment:
Q  321 gtgtccgtgtcagtgtccgtgcttcataggtaa 353  Q
    ||||||||||| |||||||||||||||||||||    
T  24343479 gtgtccgtgtctgtgtccgtgcttcataggtaa 24343447  T

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Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 10247 - 10301
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatc 259  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  10247 ctctcttgcacagacacttctgattgaaggtgtgtcctgctgtccgacacgcatc 10301  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 18951041 - 18950996
Alignment:
Q  208 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  18951041 tgttgcacg-acacttctgattgaaggtgtgtcctggtgtccgacac 18950996  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 7888155 - 7888122
Alignment:
Q  264 ccgacaccgacacttgtgattacattaaattatg 297  Q
    ||||||||||||||||||||||||||||||||||    
T  7888155 ccgacaccgacacttgtgattacattaaattatg 7888122  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 23439974 - 23439942
Alignment:
Q  320 cgtgtccgtgtcagtgtccgtgcttcataggta 352  Q
    |||||||||||| ||||||||||||||||||||    
T  23439974 cgtgtccgtgtctgtgtccgtgcttcataggta 23439942  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 9031879 - 9031919
Alignment:
Q  206 tctgttgcacggacacttctgattgaaggtgtgtcctggtg 246  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  9031879 tctgttgcacggacacttctgattgaaggcgtgtcctggtg 9031919  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 21319877 - 21319944
Alignment:
Q  208 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgaca 275  Q
    ||||||||| |||||||||||||||||| | ||||||||| ||| | ||||| | |||||||||||||    
T  21319877 tgttgcacgaacacttctgattgaaggtctatcctggtgttcgatatacatcgtgtccgacaccgaca 21319944  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 7621170 - 7621268
Alignment:
Q  205 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccga-----caccgacacttgtgattacattaaattatgt 298  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||| |   ||| | || ||     |||||| ||||||||||||||||||||||||    
T  7621170 ctctgttgcacggacacttctgattgaagacgtgtcctgatgtccgataagtatcgtgtctgatatgacaccgatacttgtgattacattaaattatgt 7621268  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 8420088 - 8420051
Alignment:
Q  263 tccgacaccgacacttgtgattacattaaattatgtta 300  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  8420088 tccgacaccgacacttgtaattacattgaattatgtta 8420051  T

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Target: scaffold0504 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 8640 - 8691
Alignment:
Q  203 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 254  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||| |||||    
T  8640 acctctgttgcacggacacttctgattgaaggcatgtcccggtgtctgacac 8691  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 10002163 - 10002196
Alignment:
Q  265 cgacaccgacacttgtgattacattaaattatgt 298  Q
    |||||||||||| |||||||||||||||||||||    
T  10002163 cgacaccgacacatgtgattacattaaattatgt 10002196  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 4298887 - 4298919
Alignment:
Q  266 gacaccgacacttgtgattacattaaattatgt 298  Q
    ||||||||||||||| |||||||||||||||||    
T  4298887 gacaccgacacttgtaattacattaaattatgt 4298919  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 24295138 - 24295166
Alignment:
Q  266 gacaccgacacttgtgattacattaaatt 294  Q
    |||||||||||||||||||||||||||||    
T  24295138 gacaccgacacttgtgattacattaaatt 24295166  T

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