View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17893_low_4 (Length: 441)

Name: NF17893_low_4
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17893_low_4
NF17893_low_4
[»] chr2 (5 HSPs)
chr2 (132-421)||(12226316-12226605)
chr2 (22-136)||(12225758-12225874)
chr2 (132-209)||(9622088-9622165)
chr2 (132-207)||(5775875-5775950)
chr2 (132-215)||(9440386-9440469)
[»] chr6 (2 HSPs)
chr6 (136-220)||(22967649-22967733)
chr6 (136-220)||(23820660-23820744)
[»] chr4 (4 HSPs)
chr4 (136-223)||(1376081-1376168)
chr4 (131-218)||(38062817-38062904)
chr4 (131-208)||(13463910-13463987)
chr4 (132-208)||(40863451-40863527)
[»] chr3 (3 HSPs)
chr3 (132-224)||(54826875-54826966)
chr3 (132-208)||(9464746-9464822)
chr3 (132-208)||(52177649-52177725)
[»] chr5 (3 HSPs)
chr5 (132-207)||(7493375-7493450)
chr5 (132-207)||(24544055-24544130)
chr5 (132-209)||(25668832-25668909)
[»] scaffold0087 (1 HSPs)
scaffold0087 (158-208)||(26544-26594)
[»] chr7 (2 HSPs)
chr7 (131-218)||(4305072-4305159)
chr7 (131-218)||(6733381-6733469)
[»] chr1 (4 HSPs)
chr1 (132-207)||(33980163-33980238)
chr1 (134-188)||(9428012-9428066)
chr1 (131-208)||(17644251-17644328)
chr1 (132-224)||(7549510-7549602)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 132 - 421
Target Start/End: Original strand, 12226316 - 12226605
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagat--tgaagaagagttacttgaatagtaggnn 229  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||      
T  12226316 ctttttgtgtatggtacaaaaatgaacttttcaccattgatttattattaaattattcaatggttaagatattgaagaagagttacttgaatagtaggtt 12226415  T
Q  230 nnnnnnngtttgttatagttctgtagttttaaagagtctttaacaacaatgtaaatgcaattctatttatttttagaaaattaaaaacttaaaaagaagt 329  Q
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12226416 ttttt--gtttgttatagttctgtatttttaaagagtctttaacaacaatgtaaatgcaattctatttatttttagaaaattaaaaacttaaaaagaagt 12226513  T
Q  330 gattattgttttttcttcaactttaaacaactatgaaaattaacaaaatattaatctagatattataaagaaccaattatttgggtatcgtt 421  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12226514 gattattgttttttcttcaactttaaacaactgtgaaaattaacaaaatattaatctagatattataaagaaccaattatttgggtatcgtt 12226605  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 12225758 - 12225874
Alignment:
Q  22 aaataaggatgttaacttagagattaaaatggtgaaggaagtgaagagtgaaagcttgat--tgtgnnnnnnnngttcccctaatgatcgactaatgaga 119  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  |||          |||||| |||||||||||||||| |    
T  12225758 aaataaggatgttaacttaaagattaaaatggtcaaggaagtgaagagtgaaagcttgatggtgttttttttttattccccaaatgatcgactaatgaaa 12225857  T
Q  120 cgttatattacactttt 136  Q
    |||||||||||| ||||    
T  12225858 cgttatattacattttt 12225874  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 9622088 - 9622165
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaag 209  Q
    ||||||||||||| |||||||||||   ||| |||||||| |||||||| || ||||||| ||| ||||| |||||||    
T  9622088 ctttttgtgtatgatacaaaaatgagtattttaccattgatttattatttaaatattcaacggtcaagatcgaagaag 9622165  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 5775875 - 5775950
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaaga 207  Q
    ||||||||||||  ||||||| ||||||||||||||||||  || || ||  |||||||||||| |||||| ||||    
T  5775875 ctttttgtgtatcatacaaaagtgaacttttcaccattgatataatagtattttattcaatggtcaagattaaaga 5775950  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 9440469 - 9440386
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttac 215  Q
    ||||||||||||  |||| |||||||||||||||||||||  ||||| ||  ||||||||||| || ||||  ||||| |||||    
T  9440469 ctttttgtgtatcatacacaaatgaacttttcaccattgatatattagtattttattcaatggctaggattagagaagggttac 9440386  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 22967649 - 22967733
Alignment:
Q  136 ttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttacttgaa 220  Q
    ||||||||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| |||||| | ||||||||    
T  22967649 ttgtgtatgatacaaaaatgagctttttatcattgatttattattaaattattcaatggttaagattaaagaagggctacttgaa 22967733  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 23820744 - 23820660
Alignment:
Q  136 ttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttacttgaa 220  Q
    ||||||||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| |||||| | ||||||||    
T  23820744 ttgtgtatgatacaaaaatgagctttttatcattgatttattattaaattattcaatggttaagattaaagaagggctacttgaa 23820660  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 1376081 - 1376168
Alignment:
Q  136 ttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttacttgaatag 223  Q
    ||||||||||| |||||||||  |||| |||||||| ||||||||||| |||||||||||||||||| |||||| | |||||||||||    
T  1376081 ttgtgtatggtgcaaaaatgagttttttaccattgatttattattaaactattcaatggttaagattaaagaagggctacttgaatag 1376168  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 38062817 - 38062904
Alignment:
Q  131 actttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttacttg 218  Q
    |||||||||||||  |||| ||||||  ||||||||||| |  ||||||||||| ||| |||||  ||||||||||||  ||||||||    
T  38062817 actttttgtgtatcatacacaaatgagtttttcaccattaatatattattaaataattgaatggccaagattgaagaatggttacttg 38062904  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 13463987 - 13463910
Alignment:
Q  131 actttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaa 208  Q
    |||||||||||||  ||||||||||   |||||||||||||  || |||||||  |||||||||  ||||||||||||    
T  13463987 actttttgtgtatcatacaaaaatgtgtttttcaccattgatataatattaaacaattcaatggccaagattgaagaa 13463910  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 40863527 - 40863451
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaa 208  Q
    ||||||||||||| |||| | |||   |||| ||||||||  || |||||||| |||||||||| ||||||||||||    
T  40863527 ctttttgtgtatgatacacagatgtgtttttaaccattgatataatattaaataattcaatggtcaagattgaagaa 40863451  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 54826875 - 54826966
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttacttgaatagt 224  Q
    ||||||| ||||||||||||||||| ||| || || |||| ||||||||||| |||||||||||||||||||||| || | | ||||||||||    
T  54826875 ctttttgcgtatggtacaaaaatgagcttgtcgcc-ttgatttattattaaactattcaatggttaagattgaagcagggctgcttgaatagt 54826966  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 9464746 - 9464822
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaa 208  Q
    ||||||||||||  |||||||||||  |||||||||||||  ||||| ||  |||||||||||||| ||||||||||    
T  9464746 ctttttgtgtatcatacaaaaatgagtttttcaccattgatatattagtattttattcaatggttaggattgaagaa 9464822  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 52177725 - 52177649
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaa 208  Q
    |||||| ||||| ||||| ||||| | |||| ||||||||  ||||||||||  |||||||||  ||||||||||||    
T  52177725 ctttttatgtatcgtacacaaatgtattttttaccattgatatattattaaacaattcaatggccaagattgaagaa 52177649  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 7493375 - 7493450
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaaga 207  Q
    ||||||||||||  ||||||| ||||||||||||||||||  ||||| ||  |||||||||||| |||||| ||||    
T  7493375 ctttttgtgtatcatacaaaagtgaacttttcaccattgatatattagtattttattcaatggtcaagattaaaga 7493450  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 24544055 - 24544130
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaaga 207  Q
    ||||||||||||  ||||||| ||||||||||||||||||  ||||| ||  |||||||||||| |||||| ||||    
T  24544055 ctttttgtgtatcatacaaaagtgaacttttcaccattgatatattagtattttattcaatggtcaagattaaaga 24544130  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 25668832 - 25668909
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaag 209  Q
    ||||||||||||| |||||||||||   ||| |||||||| |||||||| || ||||||| ||| ||||| |||||||    
T  25668832 ctttttgtgtatgatacaaaaatgagtattttaccattgatttattatttaaatattcaacggtcaagatcgaagaag 25668909  T

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Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 26594 - 26544
Alignment:
Q  158 cttttcaccattgacttattattaaattattcaatggttaagattgaagaa 208  Q
    ||||||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  26594 cttttcaccattgagatattattaaataattcaatggtcaagattgaagaa 26544  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 4305159 - 4305072
Alignment:
Q  131 actttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttacttg 218  Q
    |||||||||||||  |||| ||||||  ||||||||||| |  ||||||||||| ||| |||||  ||||||||||||  ||||||||    
T  4305159 actttttgtgtatcatacacaaatgagtttttcaccattaatatattattaaataattgaatggccaagattgaagaatggttacttg 4305072  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 6733469 - 6733381
Alignment:
Q  131 actttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaa-gagttacttg 218  Q
    |||||||||||||  ||||||||||   |||||| ||||||  || ||| |||| ||||||||| |||||||||| || ||||||||||    
T  6733469 actttttgtgtatcatacaaaaatgtgtttttcatcattgatataatatgaaataattcaatggctaagattgaaaaatgagttacttg 6733381  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 33980238 - 33980163
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaaga 207  Q
    ||||||||||||  ||||||| ||||||||||||||||||  || || ||  |||||||||||| |||||| ||||    
T  33980238 ctttttgtgtatcatacaaaagtgaacttttcaccattgatataatagtattttattcaatggtcaagattaaaga 33980163  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 9428066 - 9428012
Alignment:
Q  134 ttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattatt 188  Q
    |||||||||| || |||||||||  ||||||||||||| ||||||||||| ||||    
T  9428066 ttttgtgtatagtgcaaaaatgaggttttcaccattgatttattattaaaatatt 9428012  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 17644328 - 17644251
Alignment:
Q  131 actttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaa 208  Q
    |||||||||||||  ||||||||||  ||||||| ||||||  || |||||||  |||||||||  ||||||||||||    
T  17644328 actttttgtgtatcatacaaaaatgtgcttttcatcattgatataatattaaacaattcaatggccaagattgaagaa 17644251  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 7549602 - 7549510
Alignment:
Q  132 ctttttgtgtatggtacaaaaatgaacttttcaccattgacttattattaaattattcaatggttaagattgaagaagagttacttgaatagt 224  Q
    ||||||||||||  |||| ||||| | |||| ||||||||  ||||||||||  |||||||||  |||||| |||||  |||||||| |||||    
T  7549602 ctttttgtgtatcatacacaaatgtattttttaccattgatatattattaaacaattcaatggccaagattaaagaatggttacttgtatagt 7549510  T

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