View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_low_6 (Length: 404)
Name: NF17893_low_6
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 34573835 - 34573434
Alignment:
| Q |
13 |
caaaggtagtggattttgttggtgaggtacggattccggttggtt---------ttgaggataataagcaaatattgccacccacttggttcgagcttca |
103 |
Q |
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| T |
34573835 |
caaaggtagtggattttgttggtgaggtacggattccggttggttcggttggttttgaggataataagcaaatattgccacccacttggttcgagcttca |
34573736 |
T |
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| Q |
104 |
atgttctaacaaaaacggcaaatttttcaacaaattttgtggtttgtttccttgtattagatgatcatgtttttgtatatgatattatgctgattttgtt |
203 |
Q |
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| T |
34573735 |
atgttctaacaagaacggcaaatttttcaacaaattttgtggtttgtttccttgtattagatgatcatgtttttgtatatgatattatgctgattttgtt |
34573636 |
T |
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| Q |
204 |
ttcaatgacaaatgttagtannnnnnngaataataaatgtcagtactttaatggttatgttagtattttctctgtcgtcaagattcaaa-ccctagacct |
302 |
Q |
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| T |
34573635 |
ttcaatgacaaatgttagtatttttttgaataataaatgtcagtactttaatggttatgttagtattttctctgtcgtcaagattcaaacccctagacct |
34573536 |
T |
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| Q |
303 |
ttaactcatcatcgcatataatccattcactcaagctagtgagctacccggcatgaattataaatgcttcctgggcaagttttcatcatattgagaacat |
402 |
Q |
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| T |
34573535 |
ttaactcatcatcacatttaatccattcactcaagctagtgagctacccggcatgaattataaatgcttcctgggcaagttttcatcatattgagaacat |
34573436 |
T |
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| Q |
403 |
at |
404 |
Q |
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| T |
34573435 |
at |
34573434 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 47774069 - 47774140
Alignment:
| Q |
238 |
aaatgtcagtactttaatggttatgttagtattttctctgtcgtcaagattcaaaccctagacctttaactc |
309 |
Q |
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| T |
47774069 |
aaatgttagtatgttaattgttatgttagtattttctcccttgccaggattcaaaccctggacctttaactc |
47774140 |
T |
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