View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17893_low_8 (Length: 338)
Name: NF17893_low_8
Description: NF17893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17893_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 56 - 321
Target Start/End: Complemental strand, 40834830 - 40834577
Alignment:
| Q |
56 |
tggattttggtggagaagcttaatcttgttttcatgtttttcttcatgctttcagtttgagtttgagtttaagtttgactttcctcaacttaaactttca |
155 |
Q |
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| T |
40834830 |
tggattttggtggagaagcttaatcttgttttcatgtttttcttcatgcttt------gagtttgagtttaagtttgactttcctcaacttaaactttca |
40834737 |
T |
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| Q |
156 |
tttctacatttttgtgggaaccaccacggtgtatgtgcaactgcataattaatttcttgaattcacatacttttcctacaagagatttctacattttcgt |
255 |
Q |
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| T |
40834736 |
tttctacatttttgtgggaaccaccacggtgtatgtgcaactgcataattaatttcttgaattcacatacttttcctacaagagatttctacattttcgt |
40834637 |
T |
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| Q |
256 |
ttttcctatgtttgaaattaaaattacattcattcagatgatatgattcctagaaataacattttt |
321 |
Q |
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| T |
40834636 |
ttgtgctatgtttgaa------attacattcattgagatgatatgattcctagaaataacattttt |
40834577 |
T |
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