View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_high_19 (Length: 279)
Name: NF17894_high_19
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 35936732 - 35936856
Alignment:
| Q |
13 |
ttattctggaatgcttgatttttgtgagtggggttgaatgttcagtgttggagactgttttctgatttctaaatgtttgatggatactgttttctcattt |
112 |
Q |
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| T |
35936732 |
ttattctggaatgcttgatttttgtgagtggggttgaatgttcagtgttggagactgtgttctgatttctaaatgtttgatggatactgttttctcattt |
35936831 |
T |
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| Q |
113 |
ctaaatgtttgaattcgaagtgtgg |
137 |
Q |
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| T |
35936832 |
ctaaatgtttgaattcgaagtgtgg |
35936856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 35936908 - 35936993
Alignment:
| Q |
189 |
cagtggagtcgaatgttcggttttggatgttgttttctctgattcttaaatgtttgaatttgaagtgtggttgattttgatgatgt |
274 |
Q |
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| T |
35936908 |
cagtggagtcgagtgttcggttttggatgttgttttctctgattcttaaatgtttgaatttgaagtgtggttgattttgatgatgt |
35936993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 35936833 - 35936872
Alignment:
| Q |
235 |
taaatgtttgaatttgaagtgtggttgattttgatgatgt |
274 |
Q |
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| T |
35936833 |
taaatgtttgaattcgaagtgtggttgattttgatgatgt |
35936872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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