View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17894_high_2 (Length: 855)
Name: NF17894_high_2
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 665; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 839
Target Start/End: Complemental strand, 456535 - 455701
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456535 |
ttatagtggaaagtgattcaaagagtttgattgatatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccg------------ |
456448 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
456447 |
-gatccggaagctactgaagatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattggctcgctaatttaaacatttc |
456349 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
456348 |
tacgtatcactttgattttttagtgctggagtttcctcctaataaggtccaaagaatcctttttgattatttatccgggacttgcatgcctatgaatgtt |
456249 |
T |
|
| Q |
301 |
tgattatctttttagtttggtttttt-gggctttgtcttctcttgtaccnnnnnnnnnntggaaatattttaaagtatttcgtagcatttgtttttatct |
399 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456248 |
tgattatctttttagtttggtttttttgggctttgccttctcttgtaccaaaaaaaaattggaaatattttaaagtatttcgtagcatttgtttttatct |
456149 |
T |
|
| Q |
400 |
aatacattaatt-cattttctctcaataaaatatgacatttatttttcttcatgttatgactgttttttcttatacagttttgacatttagcccaagtat |
498 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456148 |
aatacattaatttcattttctctcaataaaat--gacatttatttttcttcatgttatgactgttttttcttatacagttttgacatttagcccaagtat |
456051 |
T |
|
| Q |
499 |
aaaagaaaaacactcgattatatacttaattgtcattatttttattccaaagggtaagaaagaaggtataatgtgtgatcggtggggtgcatgctgtttt |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456050 |
aaaagaaaaacactcgattatatacttaattgtcattatttttattccaaagggtaagaaagaaggtataatgtgtgatcggtggggtgcatgctgtttt |
455951 |
T |
|
| Q |
599 |
gctgcagaaactttttgatcgtctcgtatatgcacaaatgatagccaacgatcccaatgtaaatgaatgtacgggggcaatatattatatatgcatgaca |
698 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
455950 |
gctgcagaaattttttgatcgtctcgtatatgcacaaatgatagccaacgatcccaatgtaaatgaatgtacgggggcaatatattatatatgcatgata |
455851 |
T |
|
| Q |
699 |
agagagaccaagacgagttttatcttcttaactagtgctctaagagatgcataaccctaaagttttttaccatggtgaagttggtttttaaccaa----- |
793 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455850 |
agagagaccaagacgagttttatcttcttaactagtgctctacgagacgcataaccctaaagttttttaccatggtgaagttggtttttaaccaataaat |
455751 |
T |
|
| Q |
794 |
----taaagcacatggtttcatcgtacgtaggccctcaacctcaacctca |
839 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
455750 |
caaataaagcacatggtttcatcgtacgtaggtcctcaacctcaacctca |
455701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 1636022 - 1636356
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
1636022 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccgt----------- |
1636110 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
1636111 |
--atccggaagctgctgaagatgagttggaatgttcaactcacccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaatcatttc |
1636208 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| | |||||||||| ||||||| |||| || |||||||| |||||||| ||||||| ||| |||||||||||| |||||| |
|
|
| T |
1636209 |
tacagatcattttaattttcttgtgctggagtctcctccttttgagatcaaaagaatcatttttgatgatttatctgggacttgcatgcctagaaatgtt |
1636308 |
T |
|
| Q |
301 |
tgattatctttttagtttggtt---ttttgggctttgtcttctcttgt |
345 |
Q |
| |
|
||||| ||||||| ||| ||| |||||||||||||| |||||||| |
|
|
| T |
1636309 |
cgattaactttttaattttgttttcttttgggctttgtcctctcttgt |
1636356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 26616899 - 26616609
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
|
|
| T |
26616899 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgtt---------------agtttacc |
26616815 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||| || |||| ||| ||||||||| |||||| |
|
|
| T |
26616814 |
ggatctggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtactgattggctcactaatttaagcatttc |
26616715 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| ||||| |||||| ||||||| ||| ||| |||||||| |||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
26616714 |
tacagatcattttaattttctagtgttggagtctcctccttgtgatgtcaaaagaatcatttttgatgatttatccgaagcttgcatgcctagaaatgtt |
26616615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 44145821 - 44145915
Alignment:
| Q |
107 |
ggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttct |
201 |
Q |
| |
|
|||||||||||| |||| |||| |||| ||| ||||||||||||| || ||||||||||| |||||| ||||||| |||||||| | ||||||| |
|
|
| T |
44145821 |
ggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttct |
44145915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 38560699 - 38560616
Alignment:
| Q |
108 |
gaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaattt |
191 |
Q |
| |
|
||||||||||| |||| |||| |||| ||| ||||||||||||| | |||||||||||| ||||| |||| || |||||||| |
|
|
| T |
38560699 |
gaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcacgaaggaaatagaagtgccgattggcttgctaattt |
38560616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 2e-85; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 54346759 - 54347096
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
54346759 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgt----------- |
54346847 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||| ||||||||| || |||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
54346848 |
--atccggaagctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttc |
54346945 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| | |||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
54346946 |
tacagatcattttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggggcttacatgcctaggaatgtt |
54347045 |
T |
|
| Q |
301 |
tgattatctttttagtttgg---ttttttgggctttgtcttctcttgtacc |
348 |
Q |
| |
|
||||| ||| ||| ||| | |||||||||||||| | ||||||||||| |
|
|
| T |
54347046 |
cgattaacttcttaattttgtttttttttgggctttgccctctcttgtacc |
54347096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 27156342 - 27156050
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |
|
|
| T |
27156342 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagtttaatgggaatattcctgtttta-------gttt------acc |
27156256 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||| | |||||| |
|
|
| T |
27156255 |
ggatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttcagcatttc |
27156156 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| ||||| |||||| ||||||| ||||||| |||||||||||||| || |||||||||| ||||||||||||| ||| ||| |
|
|
| T |
27156155 |
tacagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcctttttaatgatttatccggagcttgcatgcctaggaacgtt |
27156056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 121 - 306
Target Start/End: Original strand, 43813078 - 43813262
Alignment:
| Q |
121 |
atgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttctacgtatcactttgattttt |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || ||||||||| |||||||| ||||||||||||| |||| |||||||| ||| ||| |||| | |
|
|
| T |
43813078 |
atgagttgaaatgttcaactcaaccataattggcgtgaaggaaattggagtgctgattgactcgctaacttaagcatttctatagatc-gtttaatttgt |
43813176 |
T |
|
| Q |
221 |
tagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta |
306 |
Q |
| |
|
| || || ||| |||||||| |||||||||| | || |||||||| ||||||||| | ||| ||||||| ||||||| ||||| |
|
|
| T |
43813177 |
tgttgttgaagtctcctcctagtgaggtccaataactcatttttgatgatttatccgtagtttgtatgcctaggaatgttcgatta |
43813262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 46428580 - 46428664
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttca |
85 |
Q |
| |
|
|||| ||||||||||| || |||| ||||| |||||||||||||| || |||||||| ||||||||||| ||| ||||| |||| |
|
|
| T |
46428580 |
ttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttca |
46428664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43912427 - 43912358
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatat |
70 |
Q |
| |
|
||||||| |||||||| ||||||| ||||| ||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
43912427 |
ttatagttgaaagtgactcaaagatattgatcaacatgatttctgagaagttcaagtttaatgggaatat |
43912358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42794510 - 42794594
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttca |
85 |
Q |
| |
|
|||| ||||||||||| || |||| ||||| |||||||||||| | || |||||||| ||||||||||| ||| ||||| |||| |
|
|
| T |
42794510 |
ttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttaatgggaatatgcctattttagttca |
42794594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 42794603 - 42794687
Alignment:
| Q |
107 |
ggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaattt |
191 |
Q |
| |
|
|||||||||||| |||| |||| |||| ||| ||||||||||||| || ||||||||||| ||||| |||| || |||||||| |
|
|
| T |
42794603 |
ggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt |
42794687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 43812988 - 43813050
Alignment:
| Q |
18 |
tcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgtttta |
80 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||| | ||||| ||||||| ||||||| |
|
|
| T |
43812988 |
tcaaagattttgatcgatatgatttctgataatttcaaatgtaatggcaatattcatgtttta |
43813050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 54812330 - 54812236
Alignment:
| Q |
107 |
ggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttct |
201 |
Q |
| |
|
|||||||||||| |||| || | |||| ||| ||||||||||||| || ||||||||||| ||||| |||| || |||||||| | ||||||| |
|
|
| T |
54812330 |
ggaagctgctgagaatggattagcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct |
54812236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 3e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 34389980 - 34389644
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
34389980 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcttgtttta-------gttt------acc |
34389894 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| || ||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
34389893 |
ggatccgaaagctgctgaagatgatttggaatgttcaactcaaccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttt |
34389794 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| ||||| ||| ||||||||||| |||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
34389793 |
tacatatcattttaattttttagtgttggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggggcttacatgcctaggaatgtt |
34389694 |
T |
|
| Q |
301 |
tgattatctttttagtttggtt---ttttgggctttgtcttctcttgtac |
347 |
Q |
| |
|
||||| ||| ||| ||| ||| |||||||||||| | |||||||||| |
|
|
| T |
34389693 |
cgattagcttcttaattttgttttcttttgggctttgccctctcttgtac |
34389644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 36894591 - 36894299
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||| ||| |
|
|
| T |
36894591 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgtgaatattcctgtttta-------gttt------acc |
36894505 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| | |||| ||||||||||||| ||||| |
|
|
| T |
36894504 |
ggatccggaagttgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgttgattggctcgctaatttaagcattta |
36894405 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| ||||| |||||| ||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
36894404 |
tacagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggagcttgcatgcctaggaatgtt |
36894305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 47597765 - 47597681
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttca |
85 |
Q |
| |
|
|||| ||||||||||| || |||| ||||| |||||||||||||| || |||||||| ||||||||||| ||| ||||| |||| |
|
|
| T |
47597765 |
ttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttca |
47597681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 4228291 - 4228382
Alignment:
| Q |
110 |
agctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttct |
201 |
Q |
| |
|
||||||||| |||| |||| |||| ||| ||||||||||||| || ||||||||||| ||||| |||| || |||||||| | ||||||| |
|
|
| T |
4228291 |
agctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct |
4228382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 13186912 - 13187248
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
13186912 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgt----------- |
13187000 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|| |||||||||||||| | ||||||||||||||||||||| |||||||| || |||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
13187001 |
--atccggaagctgctgaagacgagttggaatgttcaactcaatcatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttc |
13187098 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| ||||| ||| ||||| | ||| |||||| ||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
13187099 |
tacatatcattttaattttattgtgttggagtctcctccttgtgaggt-caaagaatcctttttgatgatttattcggggcttgcatgcctaggaatgtt |
13187197 |
T |
|
| Q |
301 |
tgattatctttttagtttggtt---ttttgggctttgtcttctcttgtacc |
348 |
Q |
| |
|
||||| ||| ||| ||| ||| |||||||||||| | ||||||||||| |
|
|
| T |
13187198 |
cgattaacttcttaattttgttttcttttgggctttgccctctcttgtacc |
13187248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 88 - 326
Target Start/End: Original strand, 6599017 - 6599255
Alignment:
| Q |
88 |
gttttatttcaccggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgcta |
187 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||||| ||| || |||||||||| ||||||| |||| ||||||| |
|
|
| T |
6599017 |
gttttagttcaccggatccggaagttgctgaagatgaattggaatgttcaactcaaccataattggcgtgaaggaaataagagtgctgattggctcgcta |
6599116 |
T |
|
| Q |
188 |
atttaaacatttctacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcat |
287 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
6599117 |
atttaagcatttctacatatcactttgattttttagtgttggagtctcctcctagtgaggtccaaaaaatactttttgatgatttatccggggcttgcat |
6599216 |
T |
|
| Q |
288 |
gcctatgaatgtttgattatctttttagtttggtttttt |
326 |
Q |
| |
|
||||| ||||||| | ||| |||||||||||| |||||| |
|
|
| T |
6599217 |
gcctaagaatgttcgtttagctttttagtttgttttttt |
6599255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 88 - 348
Target Start/End: Complemental strand, 40426268 - 40426005
Alignment:
| Q |
88 |
gttttatttcaccggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgcta |
187 |
Q |
| |
|
|||||| || |||| || |||||||||||||| |||||||||||||||||||||| ||||| ||| | |||||||||||||||||| |||||||||||| |
|
|
| T |
40426268 |
gttttagtttaccgtatccggaagctgctgaagatgagttggaatgttcaactcacccatatttggtgtgaaggaaataggagtgctgattgactcgcta |
40426169 |
T |
|
| Q |
188 |
atttaaacatttctacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcat |
287 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||| | |||||||||| ||||||| ||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
40426168 |
atttaagcatttctacagatcattttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcttttttgatgatttatccggggcttgcat |
40426069 |
T |
|
| Q |
288 |
gcctatgaatgtttgattatctttttagtttggtt---ttttgggctttgtcttctcttgtacc |
348 |
Q |
| |
|
||||| ||||||| ||||| ||| ||| | | ||| |||||||||||| | ||||||||||| |
|
|
| T |
40426068 |
gcctaggaatgttcgattaacttcttaatcttgttttcttttgggctttgccctctcttgtacc |
40426005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 26 - 317
Target Start/End: Complemental strand, 37307444 - 37307166
Alignment:
| Q |
26 |
tttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcaccggattcggaagctgctgaaaatgag |
125 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| | ||| ||| ||| ||||| |
|
|
| T |
37307444 |
tttgatcgacatgatttctgataatttcaagttcaatgagaatattcctgtttta-------gttt------accggatctgaaagttgccgaagatgag |
37307358 |
T |
|
| Q |
126 |
ttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttctacgtatcactttgattttttagtg |
225 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||| |||| |||||||||| |||||||| |||| || || |
|
|
| T |
37307357 |
ttgaaatgttcaactcaaccatacttgacgtgaaggaaataggagtgctgattggctcgttaacttaagcatttctacggatcactttaatttactaatg |
37307258 |
T |
|
| Q |
226 |
ctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtttgattatctttttagtt |
317 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||| ||| |||||||| || |||||||||||| |||| || ||||| |||||||||| |
|
|
| T |
37307257 |
ttggagtctccttctagcgaggtccaaagaatccttttagatgatttatccaggacttgcatgcctaggaatcttcgattagctttttagtt |
37307166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7305255 - 7305029
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||| || |||| |
|
|
| T |
7305255 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgagaatattcctgttttactttaccg------------ |
7305168 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
||| ||||| |||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||| ||| ||||||||| |||||| |
|
|
| T |
7305167 |
-gatccggaacctgctgaagatgagttggaattttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctctctaatttaagcatttc |
7305069 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcct |
240 |
Q |
| |
|
||| |||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
7305068 |
tacagatcactttaattttctagtgttggagtctcctcct |
7305029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 40190594 - 40190282
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||| |||||||| ||||| | |||| |
|
|
| T |
40190594 |
ttatagtggaaagtgattcaaagattttgatcgatatgatttctgataattttaagttcaatgaacatattcctattttagtccacca------------ |
40190507 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
||| | || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||| ||||| |
|
|
| T |
40190506 |
-gatcccaaaactgctgaagatgagttggaatgttcaactcaaccatacttgacatgaaggaaataggagtgtagattgactcactaacttaagcattta |
40190408 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
|||| |||||||| |||| ||||| |||| | |||||||| |||| ||| ||||||||||||| || ||||||||| | |||||||| ||| ||||||| |
|
|
| T |
40190407 |
tacggatcactttaatttactagtgttggaatctcctcctagtgagatccgaagaatcctttttaatgatttatccgagacttgcatgtctaagaatgtt |
40190308 |
T |
|
| Q |
301 |
tgattatctttttagtttggtttttt |
326 |
Q |
| |
|
||||| ||||||| ||| ||||||| |
|
|
| T |
40190307 |
cgattagctttttaattttgtttttt |
40190282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 7305027 - 7304956
Alignment:
| Q |
279 |
ggcttgcatgcctatgaatgtttgattatctttttagtttgg--ttttttgggctttgtcttctcttgtacc |
348 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||| ||||||| | |||||||||||||| | ||||||||||| |
|
|
| T |
7305027 |
ggcttgcatgcctaagaatgttcgattagcttcttagttttgttttttttgggctttgccctctcttgtacc |
7304956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 5e-80; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 48618958 - 48619268
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || || |
|
|
| T |
48618958 |
ttatagtggaaagtgattcaaagattttgattgacatgatttctgataatttcaagtttaatgggaatattcctgttttagtttactgt----------- |
48619046 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||| |||| ||||||||||||| |||||| |
|
|
| T |
48619047 |
--atccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttc |
48619144 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| ||||| |||||| ||||||| |||| || ||||||||||||||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
48619145 |
tacaaatcattttaattttctagtgttggagtctcctccttctgagatcaaaagaatcctttttgatgatttatccggggcttgcatgcttaggaatgtt |
48619244 |
T |
|
| Q |
301 |
tgattatctttttagtttggtttt |
324 |
Q |
| |
|
||||| ||| ||| ||| ||||| |
|
|
| T |
48619245 |
cgattagcttcttaattttgtttt |
48619268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8019919 - 8019584
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
8019919 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccgt----------- |
8019831 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|| ||||| |||||||| |||||||||||||||||||||| ||||||||| || |||||||||||||||||| |||| ||||||||||||| | ||| |
|
|
| T |
8019830 |
--atccggaatctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagtaattc |
8019733 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| | |||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
8019732 |
tacagatca-tttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccgggacttgcatgcctaagaatgtt |
8019634 |
T |
|
| Q |
301 |
tgattatctttttagtttggtt---ttttgggctttgtcttctcttgtac |
347 |
Q |
| |
|
||||| ||| ||| ||| ||| |||||||||||| | |||||||||| |
|
|
| T |
8019633 |
cgattaacttcttaattttgttttcttttgggctttgccctctcttgtac |
8019584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 29213901 - 29213592
Alignment:
| Q |
4 |
tagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcaccgga |
103 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| || |
|
|
| T |
29213901 |
tagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatatttctgttttacttcaccg-------------ga |
29213815 |
T |
|
| Q |
104 |
ttcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaata-ggagtgctaattgactcgctaatttaaacatttcta |
202 |
Q |
| |
|
| | |||||| |||| |||||||||||||||||||||||||||||||| || ||| |||| | |||||| | |||||||||||||||||| |||||||| |
|
|
| T |
29213814 |
tccagaagctattgaagatgagttggaatgttcaactcaaccatacttggcgtgaaagaaaaaaggagtgttgattgactcgctaatttaagcatttcta |
29213715 |
T |
|
| Q |
203 |
cgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtttg |
302 |
Q |
| |
|
| |||||||| ||||| | ||| |||||| |||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| | |
|
|
| T |
29213714 |
cagatcactttaattttcttgtgttggagtctcctcctagtgaggtccaaagaatcttttttgatgatttatcctgggcttgcatgcctaggaatgttcg |
29213615 |
T |
|
| Q |
303 |
attatctttttagtttggttttt |
325 |
Q |
| |
|
|||| ||| ||||||| |||||| |
|
|
| T |
29213614 |
attagcttgttagttttgttttt |
29213592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 24473472 - 24473659
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||| ||||||||||| || |||| ||||| |||||||||||||| || |||||||| ||||||||||| ||| ||||| |||| ||| | | |
|
|
| T |
24473472 |
ttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttcatcgtatca------- |
24473564 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||||||||||| |||| |||| |||| ||| ||||||||||||| || ||||||||||| ||||| |||| || |||||||| | |||||| |
|
|
| T |
24473565 |
------ggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc |
24473658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 24468617 - 24468711
Alignment:
| Q |
107 |
ggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttct |
201 |
Q |
| |
|
|||||||||||| |||| |||| |||| ||| ||||||||||||| || ||||||||||| ||||| |||| || |||||||| | ||||||| |
|
|
| T |
24468617 |
ggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct |
24468711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 5e-80; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 23949722 - 23950032
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
23949722 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccgt----------- |
23949810 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|| |||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
23949811 |
--atccggaagctgctgaagatgagttagaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttc |
23949908 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| ||| ||||| | ||| |||||| ||||||| ||||||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
23949909 |
tacagatcattttaattttattgtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggggtttgcatgcctaggaatgtt |
23950008 |
T |
|
| Q |
301 |
tgattatctttttagtttggtttt |
324 |
Q |
| |
|
||||| ||| ||| ||| ||||| |
|
|
| T |
23950009 |
cgattaacttcttaattttgtttt |
23950032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 5308666 - 5309001
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
5308666 |
ttatagtggaaagtgaatcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgt----------- |
5308754 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|| ||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
5308755 |
--atccggaatctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttc |
5308852 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| ||||| ||| ||||| | ||| |||||| ||||||| ||||||| |||||||| |||||||| |||||||| || |||||||||||| ||||||| |
|
|
| T |
5308853 |
tacatatcattttaattttcttgtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccaggacttgcatgcctaggaatgtt |
5308952 |
T |
|
| Q |
301 |
tgattatctttttagtttggtt---ttttgggctttgtcttctcttgta |
346 |
Q |
| |
|
||||| ||| ||| ||| ||| |||||||||||| | ||||||||| |
|
|
| T |
5308953 |
cgattaacttcttaattttgtttacttttgggctttgccctctcttgta |
5309001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 23085085 - 23084793
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
23085085 |
ttatagtggaaagtgatttaaagattttgatcgacatgatttttgataatttcaagttcaatgggaatattcatgtttta-------gttt------acc |
23084999 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
23084998 |
ggatccggaagctgctgaagatgagttggaatgttcaactcaaccatatttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttc |
23084899 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||||||||| ||| ||||| ||||| |||||| ||||||| ||||||| ||| |||| |||||||| |||||||||| |||||||| |||| ||||||| |
|
|
| T |
23084898 |
tacgtatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaataatcatttttgatgatttatccggagcttgcatacctaggaatgtt |
23084799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 26 - 348
Target Start/End: Original strand, 42677240 - 42677552
Alignment:
| Q |
26 |
tttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcaccggattcggaagctgctgaaaatgag |
125 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| || |||||||||||||| ||||| |
|
|
| T |
42677240 |
tttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgt-------------atccggaagctgctgaagatgag |
42677326 |
T |
|
| Q |
126 |
ttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttctacgtatcactttgattttttagtg |
225 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||| ||||||||| ||| ||| ||||| ||||| |
|
|
| T |
42677327 |
ttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacagatctttttaattttctagtg |
42677426 |
T |
|
| Q |
226 |
ctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtttgattatctttttagtttggtt--- |
322 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| || ||||| ||| ||| ||| ||| |
|
|
| T |
42677427 |
ttggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatctggggcttgcatgcctaggaatattcgattaacttcttaattttgttttc |
42677526 |
T |
|
| Q |
323 |
ttttgggctttgtcttctcttgtacc |
348 |
Q |
| |
|
|||||||||||| | ||||||||||| |
|
|
| T |
42677527 |
ttttgggctttgccctctcttgtacc |
42677552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 34554047 - 34553711
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||||||||||||||| | || ||||||||||| || ||||| ||||| | |
|
|
| T |
34554047 |
ttatagtggaaagtgattcaaagatttttatcgacatgatttctgataattttgaatttgatgggaatatttctattttagttcactg------------ |
34553960 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
||| | |||| ||||||| ||||||| |||||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
34553959 |
-gatccagaagatgctgaagatgagttagaatgttcaactcaaccatacttggtgtgaaggaaatagaagtgctgattgactcgctaatttaaacattta |
34553861 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| ||||||||| ||||| | ||| |||||| |||||||| ||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
34553860 |
tacatatcactttaattttcttgtgttggagtctcctcctagtgaggtccaaaaaatcctttttgatgatttatccagagcttgcatgcctatgaatgtt |
34553761 |
T |
|
| Q |
301 |
tgattatctttttag--tttggttttttgggctttgtcttctcttgtacc |
348 |
Q |
| |
|
||||| ||| |||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
34553760 |
cgattagcttgttagtttttttttttttgggctttgctctctcttgtacc |
34553711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 50952742 - 50952430
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
50952742 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcatgtttta-------gttt------acc |
50952656 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||| ||||||||| ||| |||||| |
|
|
| T |
50952655 |
ggatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaagaaaataggagtgctgattggctcgctaatataagcatttc |
50952556 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggt--ccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatg |
298 |
Q |
| |
|
||| ||| ||| ||||| ||||| |||||| ||||||| ||| | |||| ||| ||||| || ||||||| ||||||||||| |||| ||||| |
|
|
| T |
50952555 |
tacagatctttttaattttctagtgttggagtatcctccttgtgaaattaaaaaagtatcattttttatgatttatctggggcttgcatacctaggaatg |
50952456 |
T |
|
| Q |
299 |
tttgattatctttttagtttggtttt |
324 |
Q |
| |
|
|| ||||| ||| ||| ||| ||||| |
|
|
| T |
50952455 |
ttcgattagcttcttaattttgtttt |
50952430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22065376 - 22065292
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttca |
85 |
Q |
| |
|
|||| ||||||||||| || |||| ||||| |||||||||||||| || |||||||| ||||||||| | ||| ||||| |||| |
|
|
| T |
22065376 |
ttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatgtgcctattttagttca |
22065292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 4e-71; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 18259314 - 18259022
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||| ||| |
|
|
| T |
18259314 |
ttatagtggaaagtgattcaaagattttgatcgacatgatttctgataattccaaattcaatgggaatattcttgtttta-------gttt------acc |
18259228 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| |||||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||| ||||||| |||| ||||||||||||| |||||| |
|
|
| T |
18259227 |
ggatccggaagctgctgaagataagttgaaatgttcaactcaaccatacctggcgcgaaggaaatatgagtgctgattggctcgctaatttaagcatttc |
18259128 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
|| |||| ||| ||||| ||||| |||||| ||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
18259127 |
gacagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggggcttgcatgcctaggaatgtt |
18259028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 22540234 - 22540545
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| |||| || |
|
|
| T |
22540234 |
ttatagttgaaagtgattcaaagattttgatcgacgtgatttctgataatttcaagttcgatggaaatattcctgtttta-------gttt------act |
22540320 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
22540321 |
ggatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtaaaggaaataggagtgttgattgactcgctaatttaagcatttc |
22540420 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| |||| || ||||| ||||| || ||| ||||||| ||||||| |||||||| |||||||| |||||||||| |||||||||| || |||||| |
|
|
| T |
22540421 |
tacagatcatttaaattttctagtgttgaagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggagcttgcatgcatagaaatgtt |
22540520 |
T |
|
| Q |
301 |
tgattatctttttagtttggttttt |
325 |
Q |
| |
|
||||| ||| ||| ||| |||||| |
|
|
| T |
22540521 |
cgattagcttcttaattttgttttt |
22540545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 34080913 - 34080585
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| || |||||||||||||| ||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
34080913 |
ttatagtggaaagtgatttaaagattttgatggatatgatttctgataaattcaagttcaatgcgaatattcttgttttagttcaccg------------ |
34080826 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
||| | |||||||||||| ||| |||||||||||||||||||||||||||| || |||||||| | ||||| | |||| || |||||||||||||||| |
|
|
| T |
34080825 |
-gatccagaagctgctgaagatgggttggaatgttcaactcaaccatacttggcgtgaaggaaacatgagtgttgattggcttgctaatttaaacatttt |
34080727 |
T |
|
| Q |
201 |
tacgtatcactttgattttttagtgctggagtttcctcctaatgaggtccaaagaatcctttttgattatttatccggggcttgcatgcctatgaatgtt |
300 |
Q |
| |
|
||| ||||||||| ||||| ||||| |||||| |||||| ||||||||||| ||||||||||||| |||||| || ||||||||||||| |||||| |
|
|
| T |
34080726 |
tacatatcactttaattttatagtgttggagt---ctcctagtgaggtccaaaaaatcctttttgatgatttatttggagcttgcatgcctagaaatgtt |
34080630 |
T |
|
| Q |
301 |
tgattatctttttagtttggttttttgggctttgtcttctcttgt |
345 |
Q |
| |
|
||||| |||||| ||| ||||||| | ||||| | |||||||| |
|
|
| T |
34080629 |
cgattagttttttaattttgtttttttgactttgccatctcttgt |
34080585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 4560491 - 4560304
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccgttttatttcacc |
100 |
Q |
| |
|
|||| ||||||||||| || |||| ||||| |||||||||||||| || |||||||| ||||||||||| ||| ||||| |||| ||| | | |
|
|
| T |
4560491 |
ttattgtggaaagtgactcgaagatattgatcgacatgatttctgaaaagttcaagtttaatgggaatatgcctattttagttcatcgtatca------- |
4560399 |
T |
|
| Q |
101 |
ggattcggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttc |
200 |
Q |
| |
|
|||||||||||| |||| |||| |||| ||| ||||||||||||| || ||||||||||| |||||| ||||||| |||||||| | |||||| |
|
|
| T |
4560398 |
------ggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttc |
4560305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 18934170 - 18934264
Alignment:
| Q |
107 |
ggaagctgctgaaaatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattgactcgctaatttaaacatttct |
201 |
Q |
| |
|
|||||||||||| |||| |||| |||| ||| ||||||||||||| || ||||||||||| ||||| |||| || |||||||| | ||||||| |
|
|
| T |
18934170 |
ggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct |
18934264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18883405 - 18883489
Alignment:
| Q |
1 |
ttatagtggaaagtgattcaaagagtttgattgacatgatttctgataatttcaagttcaatgggaatattcctgttttatttca |
85 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||| ||||||||||| || || || ||||| ||||||||||| ||| ||||| |||| |
|
|
| T |
18883405 |
ttatagtggaaaatgactcaaagatattgatcgacatgatttcggacaagtttaagtttaatgggaatatccctattttagttca |
18883489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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