View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17894_high_21 (Length: 273)

Name: NF17894_high_21
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17894_high_21
NF17894_high_21
[»] chr4 (8 HSPs)
chr4 (8-258)||(36935686-36935936)
chr4 (181-258)||(35097923-35098000)
chr4 (181-258)||(35098212-35098289)
chr4 (181-258)||(35072682-35072759)
chr4 (167-258)||(36953624-36953712)
chr4 (181-258)||(36296455-36296532)
chr4 (180-258)||(35107101-35107179)
chr4 (182-258)||(36940478-36940554)
[»] chr6 (2 HSPs)
chr6 (180-258)||(24040737-24040815)
chr6 (181-258)||(24014181-24014258)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 36935686 - 36935936
Alignment:
Q  8 gaaaatttgtttcatagataaaaataaactggaaaattggaatatgatatttactgcacataaaattttctcaaaattacaaaacacattacatgatttt 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36935686 gaaaatttgtttcaaagataaaaataaactggaaaattggaatatgatatttactgcacataaaattttctcaaaattaaaaaacacattacatgatttt 36935785  T
Q  108 ccttcatacacacagtagacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatctaaccagagatatcaatggtcttcactt 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935786 ccttcatacacacagtacacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatctaaccagagatatcaatggtcttcactt 36935885  T
Q  208 caggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36935886 caggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattct 36935936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 35098000 - 35097923
Alignment:
Q  181 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || ||||||||||||||||||||||    
T  35098000 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattct 35097923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 35098289 - 35098212
Alignment:
Q  181 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || ||||||||||||||||||||||    
T  35098289 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattct 35098212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 35072682 - 35072759
Alignment:
Q  181 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    |||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || ||||||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattct 35072759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 36953624 - 36953712
Alignment:
Q  167 ctcgattagtatctaaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    ||||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||| || || || |||  ||||||||||||||    
T  36953624 ctcgattagtatc-aacctgggatatcaatgttcttcacttcaggcttctaaacctcttctttaggaacagttaca--gagaacaccattct 36953712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 36296455 - 36296532
Alignment:
Q  181 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    |||||||||| ||||| | ||| || ||||| |||||||| ||||||||||| || || |||||||||||||||||||    
T  36296455 aaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattct 36296532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 35107179 - 35107101
Alignment:
Q  180 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    ||||||||||| |||||||  || |||||||||||||| | |||||| || || || || |||| ||||||||||||||    
T  35107179 taaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattct 35107101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 36940478 - 36940554
Alignment:
Q  182 accagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    |||||||||||||||||| || |||||| | ||||| | ||||| ||| ||||| || ||||||||||  |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattct 36940554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 24040737 - 24040815
Alignment:
Q  180 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| || || || || |||||||||| ||||||||    
T  24040737 taaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattct 24040815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 24014181 - 24014258
Alignment:
Q  181 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattct 258  Q
    |||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || ||||||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattct 24014258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University