View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17894_high_22 (Length: 272)
Name: NF17894_high_22
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 2392122 - 2391878
Alignment:
| Q |
13 |
aatatcaccaatgataggaagtaggaacgatcgtaattcttgcaagtacagtttgctaagcttttcacttccttgttgtcccaaggatataaagctttag |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2392122 |
aataccaccaatgataggaagtaggaacgatcgtaattcttgcaagtacagtttgctaagcttttcacttccttgttgtcccaaggatataaagctttag |
2392023 |
T |
|
| Q |
113 |
cttccatagtttgagtttgtgaattggaatggttcacgcacccacttatctatagtgatcaatatctattatcctacttgcaagtgtatgtcccgttggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2392022 |
cttccatagtttgagtttgtgaattggaatggttcacgcacccacttatctatagtgatcaatatctattatcctacttgcaagtgtatgtcccgttggt |
2391923 |
T |
|
| Q |
213 |
tttttgtgtcaaatatcaggctgcatgcatttgaatgtaagttgt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2391922 |
tttttgtgtcaaatatcaggctgcatgcatttgaatgtaagttgt |
2391878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 2364981 - 2365045
Alignment:
| Q |
188 |
acttgcaagtgtatgtcccgttggttttttgtgtcaaatatcaggctgcatgcatttgaatgtaa |
252 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2364981 |
acttacaagtgtatgtctcattggttttttgtgtcaaatatccggctgcatgcatttgaatgtaa |
2365045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 4250871 - 4250915
Alignment:
| Q |
126 |
agtttgtgaattggaatggttcacgcacccacttatctatagtga |
170 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4250871 |
agtttgtgaattggaatggttcacgtactcacttatctatagtga |
4250915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 4250798 - 4250832
Alignment:
| Q |
60 |
acagtttgctaagcttttcacttccttgttgtccc |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4250798 |
acagtttgctaagcttttcacttccttgttgtccc |
4250832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University