View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_high_27 (Length: 253)
Name: NF17894_high_27
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 26980773 - 26981010
Alignment:
| Q |
1 |
tgaccaatttttatgtaacacgcaatttacctgatgacagatcttatgtagtagatatggtctgcaaggctgttggttttcccttgttggatttcaatgg |
100 |
Q |
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| T |
26980773 |
tgaccaatttttatgtaacacgcaatttacctgatgacagatcttatgtagtagatatggtctgcaaggctgttggttttcccttgttggatttcaatgg |
26980872 |
T |
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| Q |
101 |
gtaagactcggacctagaattcatatacagtgctagtattatttcataaac--attctaacagggaaatattgtgtctattaggctcggtttttaacggc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26980873 |
gtaagactcggacctagaattcatatacagtgctagtattatttcataaacatattctaacagggaaatattgtgtctattaggctcggtttttaacggc |
26980972 |
T |
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| Q |
199 |
ccttctgcgccttctatctcccagtggcattttatact |
236 |
Q |
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| T |
26980973 |
ccttctgcgccttctatctcccagtggcattttatact |
26981010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 27000613 - 27000381
Alignment:
| Q |
6 |
aatttttatgtaacacgcaatttacct-gatgacagatcttatgtagtagatatggtctgcaaggctgttggttttcccttgttggatttcaatgggtaa |
104 |
Q |
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| T |
27000613 |
aatttttctgtaacatccaatttacctcgatg-cagatcctatctagcagatatggtctgcaaggctgttggttttcccttgctggatttcaatgggtaa |
27000515 |
T |
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| Q |
105 |
gactcggacctagaattcatatacagtgctagtattatttcataaac--attctaacagggaaatattgtgtctattaggctcggtttttaacggccctt |
202 |
Q |
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| T |
27000514 |
gactcggacctagaattcatagaaagtgctagtactttttcgtgaacatattctgacagggacatattgtgtttattaggttcggttttcatcggccctt |
27000415 |
T |
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| Q |
203 |
ctgcgccttctatctcccagtggcattttatact |
236 |
Q |
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| T |
27000414 |
ctgcgccttctatctcccaatggcattttatact |
27000381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 26986442 - 26986207
Alignment:
| Q |
3 |
accaatttttatgtaacacgcaatttacct-gatgacagatcttatgtagtagatatggtctgcaaggctgttggttttcccttgttggatttcaatggg |
101 |
Q |
| |
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|||||||||| |||||||| |||||||||| |||| |||||| ||| ||| ||||||||| ||| |||||||||||||||||||| |||||||||||||| |
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| T |
26986442 |
accaatttttctgtaacacccaatttacctcgatg-cagatcctatctagcagatatggtttgctaggctgttggttttcccttgctggatttcaatggg |
26986344 |
T |
|
| Q |
102 |
taagactcggacctagaattcatatacagtgctagtattatttcataaac--attctaacagggaaatattgtgtctattaggctcggtttttaacggcc |
199 |
Q |
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|||||||||||||||||||||||| | |||||||||| | |||| | ||| ||||| ||||||| ||||||||| ||||||| |||||||| | ||||| |
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| T |
26986343 |
taagactcggacctagaattcatagaaagtgctagtactttttcgtgaacatattctgacagggacatattgtgtttattaggttcggttttcatcggcc |
26986244 |
T |
|
| Q |
200 |
cttctgcgccttctatctcccagtggcattttatact |
236 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
26986243 |
cttctgcgccttctatctcccaatggcattttatact |
26986207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 26940889 - 26940815
Alignment:
| Q |
32 |
tgatgacagatcttatgtagtagatatggtctgcaaggctgttggttttcccttgttggatttcaatgggtaaga |
106 |
Q |
| |
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||||| |||||||| ||||| ||||| || |||||||||||||||||||||| | |||||||||||||||| |
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| T |
26940889 |
tgatgccagatcttgtgtagcagatacgggttgcaaggctgttggttttccctcgcaatatttcaatgggtaaga |
26940815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 26950111 - 26950051
Alignment:
| Q |
49 |
tagtagatatggtctgcaaggctgttggttttcccttgttggatttcaatgggtaagactc |
109 |
Q |
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||||||||||||| ||||||| || |||||| |||| | ||||||||| |||||| ||||| |
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| T |
26950111 |
tagtagatatggtttgcaaggatgctggtttaccctcgctggatttcagtgggtatgactc |
26950051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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