View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_high_31 (Length: 238)
Name: NF17894_high_31
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_high_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6609486 - 6609249
Alignment:
| Q |
1 |
cgtatgcctttgtagttaatgcgaattgctacagcccctttcttccttccaattattcctccacaacccccaaaagattctttgtccacatgcaattctg |
100 |
Q |
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| T |
6609486 |
cgtatgcctttgtagttaatgcgaattgctacagcccctttcttccttccaattattcctccacaacccccaaaagattctttgtccacatgcaattctg |
6609387 |
T |
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| Q |
101 |
catacaattaaaatcatctcatttaacatacattaacaattattataaaattaagcgtagtgaaaatataatccgacataaaaaatctcaccttgaatga |
200 |
Q |
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| T |
6609386 |
catacaattaaaatcatctcatttaacatacattaacaattattataaaattaagcgtagtgaaaatataatctgacataaaaaatctcaccttgaatga |
6609287 |
T |
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| Q |
201 |
atgattttgcattctttggtccaaacaggtacaactgc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6609286 |
atgattttgcattctttggtccaaacaggtacaactgc |
6609249 |
T |
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