View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17894_high_4 (Length: 552)
Name: NF17894_high_4
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_high_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 10 - 552
Target Start/End: Complemental strand, 25825591 - 25825049
Alignment:
| Q |
10 |
agcaaagggaagattgagagtttgcatcataagagagttggttcaacattgtcttttagagagccaccaacttttcaaatgagtgaaaatgagagctttt |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25825591 |
agcaatgggaagattgagagtttgcatcataagagagttggttcaacattgtcttttagagagccaccaacttttcaaatgagtgaaaatgagagctttt |
25825492 |
T |
|
| Q |
110 |
ttgtgcttagttttggaaatgaaggtgagagtggtaaagggttgaaatcaagtgggagaaaaaagaaaatgagttgttcagaattgaaggagaagaagaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25825491 |
ttgtgcttagttttggaaatgaaggtgagagtggtaaagggttgaaatcaaatgggagaaaaaagaaaatgagttgttcagaattgaaggagaagaagaa |
25825392 |
T |
|
| Q |
210 |
caagggagagaatgtttgtgatgagaaagtgagcaaaagggtttctaataaacttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtct |
309 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25825391 |
caagagagagattgtttgtgatgagaaaatgagcaaaagggtttctaataaacttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtct |
25825292 |
T |
|
| Q |
310 |
gaaaagaagtgttttaattcagaagcaggtgaattgttgaaggcaaagaattgcaaggaagttgtagttggtgaaatgctgaagaagagaaggacgagga |
409 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25825291 |
gaaaagaagtgttttgattcagaagcaggtgagttgttgaaggcaatgaattgcaaggaagttgtagttggtgaaaggctgaagaagagaaggacgagga |
25825192 |
T |
|
| Q |
410 |
agaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaatcagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtcttg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25825191 |
agaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaatcagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtcttg |
25825092 |
T |
|
| Q |
510 |
tgtagcaggtttgtttcttttgcgaatttgatgtgttcaactt |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25825091 |
tgtagcaggtttgtttcttttgcgaatttgatgtgttcaactt |
25825049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University