View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_high_5 (Length: 548)
Name: NF17894_high_5
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Complemental strand, 41302890 - 41302371
Alignment:
| Q |
20 |
acttggactgcgatgatcactgggtacatgaaatttgggagggttggattggcggaaatgttgttttggaaattgagtttgaagactttggtgacctgga |
119 |
Q |
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| T |
41302890 |
acttggactgcgatgatcactgggtacatgaaatttgggagggttggattggcggaaatgttgttttggaaattgagtttgaagactttggtgacctgga |
41302791 |
T |
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| Q |
120 |
atgctatgattgctgggtatgttgataatggtagagcagagaatgggttaaagctttttaagacaatgttggaaactggggttaaacctaatgctttgag |
219 |
Q |
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| T |
41302790 |
atgctatgattgctgggtatgttgataatggtagagcagagaatgggttaaagctttttaagacaatgttggaaactggggttaaacctaatgctttgag |
41302691 |
T |
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| Q |
220 |
cttgactagtgtgttgttgggttgtagtgatttatcagctttgcagacgggtaaacaagttcatcagttagtttgtaaatctccattgagcagggataca |
319 |
Q |
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| T |
41302690 |
cttgactagtgtgttgttgggttgtagtgatttatcagctttgcagacgggaaaacaagttcatcagttagtttgtaaatctccattgagcagggataca |
41302591 |
T |
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| Q |
320 |
actgcagtaacttcattgattagcatgtattctaagtgtggggatcttaaggattcgtgggacttatttgttcagattccgcggaaagatgttgtaacat |
419 |
Q |
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| T |
41302590 |
actgcagtaacttcattgattagcatgtattctaagtgtggggatcttaaggattcgtgggacttatttgttcagattccgcggaaagatgttgtaacat |
41302491 |
T |
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| Q |
420 |
ggaatgcaatgatttctggttacgctcaacatggagctggtgaaaaggctcttcatttgtttgatgagatgaaaaagagtgagataaagccagattggat |
519 |
Q |
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| T |
41302490 |
ggaatgcaatgatttctggttacgctcaacatggagctggcgaaaaggctcttcatttgtttgatgagatgaaaaagagtgagataaagccagattggat |
41302391 |
T |
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| Q |
520 |
tacttttgttgcagtattat |
539 |
Q |
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| T |
41302390 |
tacttttgttgcagtgttat |
41302371 |
T |
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