View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17894_high_9 (Length: 497)

Name: NF17894_high_9
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17894_high_9
NF17894_high_9
[»] chr5 (3 HSPs)
chr5 (15-488)||(10813075-10813549)
chr5 (333-425)||(28499171-28499263)
chr5 (331-425)||(23151262-23151356)
[»] chr7 (11 HSPs)
chr7 (1-489)||(34655508-34655997)
chr7 (324-454)||(19720437-19720568)
chr7 (331-489)||(43970035-43970194)
chr7 (331-426)||(513845-513940)
chr7 (331-488)||(27745660-27745818)
chr7 (331-425)||(41147747-41147841)
chr7 (341-419)||(31802468-31802546)
chr7 (331-425)||(12350730-12350824)
chr7 (341-488)||(29460339-29460487)
chr7 (331-481)||(41605361-41605511)
chr7 (356-416)||(18221472-18221532)
[»] chr3 (13 HSPs)
chr3 (15-489)||(52964079-52964552)
chr3 (21-377)||(16927334-16927690)
chr3 (282-489)||(54548256-54548464)
chr3 (341-489)||(13102155-13102304)
chr3 (429-489)||(16927273-16927333)
chr3 (332-419)||(51140170-51140257)
chr3 (430-479)||(2123720-2123769)
chr3 (358-425)||(2497101-2497168)
chr3 (342-425)||(4741584-4741667)
chr3 (331-425)||(31574842-31574936)
chr3 (356-425)||(2618662-2618731)
chr3 (324-360)||(13288808-13288844)
chr3 (453-489)||(47105999-47106035)
[»] chr4 (8 HSPs)
chr4 (15-489)||(5185408-5185883)
chr4 (331-425)||(32499539-32499633)
chr4 (341-476)||(54421351-54421487)
chr4 (331-419)||(42327902-42327990)
chr4 (331-394)||(21257039-21257102)
chr4 (343-419)||(43733915-43733991)
chr4 (277-394)||(34692396-34692513)
chr4 (341-406)||(38761397-38761462)
[»] chr1 (12 HSPs)
chr1 (21-489)||(51491697-51492165)
chr1 (205-489)||(28037512-28037797)
chr1 (331-426)||(33978175-33978270)
chr1 (331-488)||(27643299-27643457)
chr1 (326-485)||(7829806-7829966)
chr1 (331-419)||(39501118-39501206)
chr1 (326-397)||(33703709-33703780)
chr1 (375-488)||(7386701-7386815)
chr1 (331-381)||(20129628-20129678)
chr1 (332-419)||(14650987-14651071)
chr1 (332-419)||(14660778-14660862)
chr1 (354-395)||(30840937-30840978)
[»] chr2 (6 HSPs)
chr2 (272-469)||(648450-648648)
chr2 (341-424)||(36756951-36757034)
chr2 (301-413)||(4244342-4244454)
chr2 (343-417)||(14786012-14786086)
chr2 (331-415)||(10748043-10748127)
chr2 (271-362)||(3307707-3307797)
[»] scaffold0996 (1 HSPs)
scaffold0996 (331-426)||(1541-1636)
[»] chr8 (5 HSPs)
chr8 (332-488)||(16484084-16484241)
chr8 (331-419)||(34752689-34752777)
chr8 (331-419)||(11629493-11629581)
chr8 (331-419)||(9180730-9180818)
chr8 (341-425)||(5896306-5896390)
[»] scaffold0067 (1 HSPs)
scaffold0067 (331-425)||(10978-11072)
[»] chr6 (3 HSPs)
chr6 (331-419)||(10158954-10159042)
chr6 (318-488)||(16863221-16863391)
chr6 (379-419)||(14453400-14453440)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 488
Target Start/End: Complemental strand, 10813549 - 10813075
Alignment:
Q  15 ggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatgg 114  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  10813549 ggtgtgataaaatgcaacgttgacgcagcaattttccaccataatacaattgttggatatggaatctgttttcgaaattcggaggggcaactcttaatgg 10813450  T
Q  115 caaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaac 214  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  10813449 caaaatctgcattttttccatcctcgatgactgtttttgaagctgaagctactgcattgtcggaggcgataaaattggcattctctttgggatttcaaac 10813350  T
Q  215 tgtccgctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggt 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10813349 tgtccgctttgaaacagattgtatggcccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggt 10813250  T
Q  315 ctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcc 414  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  10813249 ctcttgtttacaaataccgactttaaagtgtcatatattcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcc 10813150  T
Q  415 cccatct-ttttatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 488  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10813149 cccatcttttttatagtgtaccttcaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 10813075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 333 - 425
Target Start/End: Original strand, 28499171 - 28499263
Alignment:
Q  333 gactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||| |||||||||| ||||||||||||| |||||  ||||||||||||| ||| |||||||  ||||||||| |||||||||| |||||    
T  28499171 gactttacagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattttt 28499263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 23151262 - 23151356
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||||||| ||| |||||||  ||||||||| |||||||||| |||||    
T  23151262 ccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattttt 23151356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 34655997 - 34655508
Alignment:
Q  1 tcaaatcgtcttttggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggg 100  Q
    ||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||   ||||| ||||||||||||||||||    
T  34655997 tcaaatcgtcttccggtgtgataaaatgcaacattgacgcaacaattttccacaataatataattgttggatataaaatctgttttcgaaattcagaggg 34655898  T
Q  101 gcaactcttaatggcaaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctct 200  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34655897 gcaactcttaatgacaaaatctgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctct 34655798  T
Q  201 ttggaattccaaactgtccgctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattattt 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34655797 ttgggattccaaactgtccgctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattattt 34655698  T
Q  301 ctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| || ||||||| |||||||||| ||    
T  34655697 ctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagttaatagtgttgttcttagtataactagagcttcctt 34655598  T
Q  401 atctcatcttagcccccatc-tttttatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    |||||||  ||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34655597 atctcatactagcctccatcttttttatagtgtaccatcaactttgtactctttgttcttaaatgaaatgcattaattttgcctttgcta 34655508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 454
Target Start/End: Original strand, 19720437 - 19720568
Alignment:
Q  324 acaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttt 423  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |  |||  ||||| ||| ||||| || | |||||||||  |||    
T  19720437 acaaataccgactttaaagtgtcatatattaggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctagcccccacattt 19720536  T
Q  424 tt-atagtgtaccattaactttgtactctttg 454  Q
    || ||| ||||||||  |||||||||||||||    
T  19720537 ttcatattgtaccatctactttgtactctttg 19720568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 489
Target Start/End: Original strand, 43970035 - 43970194
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatctttt-tatag 429  Q
    ||||||||| |||||| ||| || | |||||||| |||| | ||||||||||||| |||||||| || |||||  ||| |||||||||| |||| |||      
T  43970035 ccgactttatagtgtcatatgttcgtaggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattttctatga 43970134  T
Q  430 tgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    ||||||||  ||||||||| ||||| |  |||| ||||||||||||| ||||||||||||    
T  43970135 tgtaccatctactttgtaccctttgattatgaacgaaatgcattaatcttgcctttgcta 43970194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 426
Target Start/End: Original strand, 513845 - 513940
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttta 426  Q
    ||||||||  |||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| || || |||| ||||||    
T  513845 ccgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctaacctccatattttta 513940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 488
Target Start/End: Complemental strand, 27745818 - 27745660
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt-atag 429  Q
    ||||||||| |||||||| | ||| |||| ||||||||| | ||||||||||||| |||||||| || |||||||| | ||||||| || ||||| ||      
T  27745818 ccgactttacagtgtcgtttgttaagaggtaagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagcccctatgtttttaatga 27745719  T
Q  430 tgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 488  Q
    ||||||||  ||| |||||||||| ||  | ||| ||||||| |||||||| |||||||    
T  27745718 tgtaccatctactatgtactctttatttctaaataaaatgcactaattttgtctttgct 27745660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 41147747 - 41147841
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||||||| ||| |||||||  ||||||||| |||||||||| |||||    
T  41147747 ccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattttt 41147841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 31802468 - 31802546
Alignment:
Q  341 agtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    |||||||||| || ||||||||||||||| | ||||||||||||| ||||||||||| |||| ||||| ||||| ||||    
T  31802468 agtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatcctagcctccat 31802546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 12350824 - 12350730
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||  |||||||||| ||||||||||||| ||||   ||||||||||||| ||| |||||||  ||||||||| || ||||||| |||||    
T  12350824 ccgactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcatcctatcccccatattttt 12350730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 488
Target Start/End: Complemental strand, 29460487 - 29460339
Alignment:
Q  341 agtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatctttt-tatagtgtaccatta 439  Q
    |||||| ||| || ||||| |||| |||| | |||| |||||||| ||||||||||  |||| | |||||| ||||||| |||| |||  ||||||||      
T  29460487 agtgtcttatgttcggaggaaagccaataaggttgcccatagtattgctagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 29460388  T
Q  440 actttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 488  Q
    ||||| ||| ||||  |  ||||||||||| ||||||||||||||||||    
T  29460387 actttataccctttaattatgaatgaaatgtattaattttgcctttgct 29460339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 481
Target Start/End: Original strand, 41605361 - 41605511
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat-ctttttatag 429  Q
    ||||||||  |||||||||| ||  |||| | || |||| | ||||||||||||| |||||||| || |||||  |||| | |||||||  ||||||||     
T  41605361 ccgactttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatccaatctcaacccccatattttttataa 41605460  T
Q  430 tgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgc 481  Q
    ||||||||  ||||||||| | ||| |  |||||||||||||||||| ||||    
T  41605461 tgtaccatctactttgtac-ccttgattatgaatgaaatgcattaatcttgc 41605511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 18221532 - 18221472
Alignment:
Q  356 gaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccc 416  Q
    |||||||||||||| | ||||||||| ||| |||||||| || |||||||| | |||||||    
T  18221532 gaggcaagctaataaggttgctcatactattgctagagcatccttatctcaccctagcccc 18221472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Complemental strand, 52964552 - 52964079
Alignment:
Q  15 ggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatgg 114  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| |||||||||||  |||||||||||||||||||    
T  52964552 ggtgtgataaaatgcaacgttgacacaacaattttccacgataatacaattgttggat--ggaatctgttttcgaaattatgaggggcaactcttaatgg 52964455  T
Q  115 caaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaac 214  Q
     ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52964454 taaaatctgtgttttttccatcctcgatgattgttttagaagttgaagctactgcattgtcggaggcgataaaattggcagtctctttgggattccaaac 52964355  T
Q  215 tgtccgctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggt 314  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52964354 tgtccactttgaaatagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggt 52964255  T
Q  315 ctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||| |||||    
T  52964254 ctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcc 52964155  T
Q  415 cccatct-ttttatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52964154 cccatcttttttatagtgtaccatcaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 52964079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 16927690 - 16927334
Alignment:
Q  21 ataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatggcaaaat 120  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  16927690 ataaaatgcaacgttgacgcagcaattttccaccataatacaattgttggatatggaatctgttttcgaaattctgaggggcaactcttaatggcaaaat 16927591  T
Q  121 ttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaactgtccg 220  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16927590 ctgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcagaggcgataaaattggcagtctctttgggattccaaactgtccg 16927491  T
Q  221 ctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggtctcttg 320  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16927490 ctttgaaacagattgtataacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggtctcttg 16927391  T
Q  321 tttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgct 377  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  16927390 tttacaaataccgactttaaactgtcgtatattaggaggcaagctaatagggttgct 16927334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 282 - 489
Target Start/End: Complemental strand, 54548464 - 54548256
Alignment:
Q  282 gaagttggagacattatttctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcata 381  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  54548464 gaagctggagacattatttctcaatgtaaaggtctcttgtttacaaatgccgactttaaagtgtcgtatattaggaggcaagttaatagagttgctcata 54548365  T
Q  382 gtatagctagagcttcattatctcatcttagcccccatct-ttttatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttg 480  Q
    |||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  54548364 gtatagctagagcttccttatctcatcctagcccccatcttttttatagtgtaccatcaactttgtactctttgttcttgaatgaaatccattaattttg 54548265  T
Q  481 cctttgcta 489  Q
    |||||||||    
T  54548264 cctttgcta 54548256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 341 - 489
Target Start/End: Complemental strand, 13102304 - 13102155
Alignment:
Q  341 agtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttta-tagtgtaccatta 439  Q
    |||||||||||||| |||| ||| || || | ||||||||||| || ||||| |||| ||||| |||| || ||||| |||||||| || |||||||       
T  13102304 agtgtcgtatattacgaggtaagttattaaggttgctcatagtttaactagaacttccttatcgcatcctaacccccctctttttaatattgtaccaact 13102205  T
Q  440 actttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    ||||| ||||||||| || ||||||||| |||||||||||||||||||||    
T  13102204 actttatactctttgctcatgaatgaaacgcattaattttgcctttgcta 13102155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 16927333 - 16927273
Alignment:
Q  429 gtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16927333 gtgtaccttcaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 16927273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 51140257 - 51140170
Alignment:
Q  332 cgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    |||||||| |||||||| |||| ||| |||||| |||||| |||| ||||| ||||||||||| || ||||  |||| ||||||||||    
T  51140257 cgactttatagtgtcgtttattcggaagcaagcgaatagggttgcacatagcatagctagagcatccttatgccatcctagcccccat 51140170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 2123769 - 2123720
Alignment:
Q  430 tgtaccattaactttgtactctttgttcttgaatgaaatgcattaatttt 479  Q
    |||||||| |||||| |||||||| ||||||||||||||||||| |||||    
T  2123769 tgtaccatcaactttatactctttattcttgaatgaaatgcattcatttt 2123720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Complemental strand, 2497168 - 2497101
Alignment:
Q  358 ggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||| |||||  ||||||||||||| ||| |||||||  ||||||||| |||||||||| |||||    
T  2497168 ggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattttt 2497101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 425
Target Start/End: Complemental strand, 4741667 - 4741584
Alignment:
Q  342 gtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||| |||||||||| |||||||   ||||||||||||| |||||||| || |||||  | | |||||||||| |||||    
T  4741667 gtgtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagcatctttatccaaccctagcccccatattttt 4741584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 31574842 - 31574936
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||  |||||||||||||||||||||||  ||| |  |||||| |||||| ||||| || ||| ||||| ||| ||||| |||| |||||    
T  31574842 ccgactttgcagtgtcgtatattaggaggcaagtaaatggtgttgctcgtagtattgctagggcatcactatctaatcctagccgccatattttt 31574936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 2618731 - 2618662
Alignment:
Q  356 gaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||| |||||| | ||||| | ||||||||||||||| ||||||||||  |||||| | ||||||    
T  2618731 gaggcaagcaaatagggtagctcaaaatatagctagagcttccttatctcatcagagcccctaccttttt 2618662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 13288844 - 13288808
Alignment:
Q  324 acaaataccgactttaaagtgtcgtatattaggaggc 360  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  13288844 acaaatatcgactttagagtgtcgtatattaggaggc 13288808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 47105999 - 47106035
Alignment:
Q  453 tgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    |||| |||||||||||||| |||||||||||||||||    
T  47105999 tgtttttgaatgaaatgcaataattttgcctttgcta 47106035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Complemental strand, 5185883 - 5185408
Alignment:
Q  15 ggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatgg 114  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| ||||| |||||| |||||| |||||||||| |    
T  5185883 ggtgtgataaaatgcaacgttgacgcagcaattttccaccataat-caattgttggatatgaaatctgttttcaaaattcggaggggaaactcttaattg 5185785  T
Q  115 caaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaac 214  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  5185784 caaaatctgcattttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcaatctctttgggatttcaaac 5185685  T
Q  215 tgtccgctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5185684 tgtccgctttgaaacagattgtatgacccttgctgatgccattcacactacctccgctcacctcaatgaagttggagacattatttctcaatgtagaggt 5185585  T
Q  315 ctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  5185584 ctcttgtttacaaataccgactttaaagtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatctcatcttagcc 5185485  T
Q  415 cccatct-ttttatagtgtaccattaactttg-tactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    ||||||| |||||||||||||| | ||||||| |||| |||||| ||||||||||||||||||||||| ||||||||    
T  5185484 cccatcttttttatagtgtaccttcaactttgttactttttgtttttgaatgaaatgcattaattttgtctttgcta 5185408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 32499539 - 32499633
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||||||| ||| |||||||  ||||||||| |||||||||| |||||    
T  32499539 ccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattttt 32499633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 476
Target Start/End: Complemental strand, 54421487 - 54421351
Alignment:
Q  341 agtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatctttt-tatagtgtaccatta 439  Q
    |||||||| |||| ||||||||||||||| | ||| ||||||||| ||||||||||| ||||| |||| |||||||||| |||| |||  |||| ||       
T  54421487 agtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatgtaacaact 54421388  T
Q  440 actttgtactctttgttcttgaatgaaatgcattaat 476  Q
    ||||||||||||||| | ||| |||| ||| ||||||    
T  54421387 actttgtactctttgattttggatgatatgaattaat 54421351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 42327990 - 42327902
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||| ||| |||||||| ||| ||||||| | ||||||||||    
T  42327990 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccat 42327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 21257039 - 21257102
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagc 394  Q
    ||||||||| |||||||| | ||| |||||||||||||| | ||||||||||||| ||||||||    
T  21257039 ccgactttacagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc 21257102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 43733915 - 43733991
Alignment:
Q  343 tgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    |||||| ||| | ||||||||| |||| | | ||||||||||| ||||||||| | |||||||||| ||||||||||    
T  43733915 tgtcgtttatcaagaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccccat 43733991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 394
Target Start/End: Original strand, 34692396 - 34692513
Alignment:
Q  277 tcaatgaagttggagacattatttctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgc 376  Q
    |||||||  ||||||||||  | |||||||||||||  || ||| ||  |||||||||||||| ||| |||| |||| |||| |||  ||||||| | ||    
T  34692396 tcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaataccgactttagagtatcgtttattcggagacaaattaatagggtcgc 34692495  T
Q  377 tcatagtatagctagagc 394  Q
    |||||||| || ||||||    
T  34692496 tcatagtagaggtagagc 34692513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 38761462 - 38761397
Alignment:
Q  341 agtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctca 406  Q
    |||||||| | ||| || ||||||||||| | ||||||||||||| |||||||| || ||||||||    
T  38761462 agtgtcgtttgttaagaagcaagctaataaggttgctcatagtattgctagagcatccttatctca 38761397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 489
Target Start/End: Complemental strand, 51492165 - 51491697
Alignment:
Q  21 ataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatggcaaaat 120  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||  |||  |||||||||||||||||||    
T  51492165 ataaaatgcaacgttgacgcatcaattttccacaataatacaattgttggatatggaatctgttttcgaaattcttaggc-caactcttaatggcaaaat 51492067  T
Q  121 ttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaactgtccg 220  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  51492066 ctgcgttttttccatcctcgatgactgttttagaagttgaagctactgcattgtcggaggcgataaaattggcagtctctttgggattccaaactgtcca 51491967  T
Q  221 ctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctcaatgtagaggtctcttg 320  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51491966 atttgaaacagattgtatgacccttgttgatgccattcacactacctccaatcacctcaatgaagttggagacattatttctcaatgtaaaggtctcttg 51491867  T
Q  321 tttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatc 420  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| |||| | |||||||| |||||||||| || ||||||||    
T  51491866 tttacaaataccgactttaaagtgtcatatattatgaggcaagctaatagggttgctcataatataaccagagcttccttatctcatcctaacccccatc 51491767  T
Q  421 t-ttttatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    | ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  51491766 ttttttatagtgtactatcaactctgtactctttgttcttgaatgaaatgcattaattttgtctttgcta 51491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 205 - 489
Target Start/End: Original strand, 28037512 - 28037797
Alignment:
Q  205 aattccaaactgtccgctttgaaacagattgtatgacccttgctgatgccattcacactacctccactcacctcaatgaagttggagacattatttctca 304  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28037512 aatttcaaacggtccgttttgaaacagattgtataacccttgctgatgccattcacactacctccactcacctcaatgaagtttgagacattatttctca 28037611  T
Q  305 atgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatct 404  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  28037612 atgcagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatct 28037711  T
Q  405 catcttagcccccatc-tttttatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 489  Q
    |||| ||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28037712 catcctagcccccatcttttttatagtgtaccttcaaatttgtactctttgttcttgaatgaaatgcattaattttgcctttgcta 28037797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 426
Target Start/End: Complemental strand, 33978270 - 33978175
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttta 426  Q
    ||||||||  |||||| ||| || ||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| |||||||||| ||||||    
T  33978270 ccgactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatattttta 33978175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 331 - 488
Target Start/End: Complemental strand, 27643457 - 27643299
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt-atag 429  Q
    ||||||||| |||||||| | ||| |||||||||||||| | ||||||||||||| |||||||| || |||||||| | ||| ||| || ||||| ||      
T  27643457 ccgactttacagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatga 27643358  T
Q  430 tgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 488  Q
    ||||||||  ||| |||||||||| ||  | ||||||||||| |||||||| |||||||    
T  27643357 tgtaccatctactatgtactctttatttctaaatgaaatgcactaattttgtctttgct 27643299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 485
Target Start/End: Complemental strand, 7829966 - 7829806
Alignment:
Q  326 aaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatct-ttt 424  Q
    ||||||||| |||| |||||| | |||| | |||||||||||||   ||||||||||||||| |||||||||  |||| ||   |||||||||||| |||    
T  7829966 aaataccgattttagagtgtcttttatttgaaggcaagctaatacagttgctcatagtatagttagagcttccctatcacacactagcccccatctattt 7829867  T
Q  425 tatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgccttt 485  Q
    |||| ||||||     ||||||||  ||||||  |||||||||| ||||||| ||| ||||    
T  7829866 tatattgtacctgcctctttgtaccatttgtttatgaatgaaatacattaatcttgtcttt 7829806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 39501118 - 39501206
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||| ||||||| |||||||| ||| ||||||| | ||||| ||||    
T  39501118 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagcatcactatctcaccctagcctccat 39501206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 33703780 - 33703709
Alignment:
Q  326 aaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttc 397  Q
    |||||||||||||| ||||| || |||| |||| |||||||||||  | ||||| |||||||||||||||||    
T  33703780 aaataccgactttagagtgttgtttattcggagacaagctaatagagtcgctcaaagtatagctagagcttc 33703709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 488
Target Start/End: Original strand, 7386701 - 7386815
Alignment:
Q  375 gctcatagtatagctagagcttcattatctcatcttagcccccatcttttt-atagtgtaccattaactttgtactctttgttcttgaatgaaatgcatt 473  Q
    |||||||| || |||||||| || |||||| ||| |||||||||| ||||| ||  |||||  || | ||||||||||||| || ||||||||||| |||    
T  7386701 gctcatagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgtacactttaatttgtactctttgatcatgaatgaaatgaatt 7386800  T
Q  474 aattttgcctttgct 488  Q
    | ||||||| |||||    
T  7386801 agttttgccattgct 7386815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 20129628 - 20129678
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcata 381  Q
    ||||||||  ||||||||||||| ||||||||||||||| | |||||||||    
T  20129628 ccgactttgtagtgtcgtatattcggaggcaagctaataaggttgctcata 20129678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 14650987 - 14651071
Alignment:
Q  332 cgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    |||||||  ||||||||  ||| |||||||||| |||| | |||| ||||| ||||||||||   |||||||||||| ||||||||||    
T  14650987 cgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagag---cattatctcatcctagcccccat 14651071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 14660778 - 14660862
Alignment:
Q  332 cgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    |||||||  ||||||||  ||| |||||||||| |||| | |||| ||||| ||||||||||   |||||||||||| ||||||||||    
T  14660778 cgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagag---cattatctcatcctagcccccat 14660862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 30840937 - 30840978
Alignment:
Q  354 aggaggcaagctaataggattgctcatagtatagctagagct 395  Q
    |||||||||||||||| ||||||| ||| |||||||||||||    
T  30840937 aggaggcaagctaataagattgctgatattatagctagagct 30840978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 469
Target Start/End: Original strand, 648450 - 648648
Alignment:
Q  272 tcacctcaatgaagttggagacattatttctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaatagg 371  Q
    ||||||||||||| |||||||||| ||||| ||||||||     |||| | ||||||| ||||||||| |||||||||||| ||||||||||| |||||     
T  648450 tcacctcaatgaatttggagacataatttcgcaatgtaggaacatcttatctacaaatcccgactttagagtgtcgtatataaggaggcaagcaaataga 648549  T
Q  372 attgctcatagtatagctagagcttcattatctcatcttagcccccatcttt-ttatagtgtaccattaactttgtactctttgttcttgaatgaaatg 469  Q
     | |||||||| |||||||||||||| ||||| || | ||||||||| |||| ||||  ||||||||  ||||||||||| ||| |  |||||||||||    
T  648550 gtggctcatagcatagctagagcttctttatcacaacctagcccccacctttattatcatgtaccatctactttgtactcattgattatgaatgaaatg 648648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 36757034 - 36756951
Alignment:
Q  341 agtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatctttt 424  Q
    |||||||| |||| |||||||||||||||   ||||||||||||| ||||||||||| ||||| |||| |||||||||| ||||    
T  36757034 agtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatatttt 36756951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 4244342 - 4244454
Alignment:
Q  301 ctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcatt 400  Q
    ||||||||||   ||| ||| |||||||| || ||||||| ||||| | ||||| ||||||||| |||||   ||||||||||||||||||||| || ||    
T  4244342 ctcaatgtaggaatcttttgattacaaattccaactttaaggtgtcatttattaagaggcaagcaaatagagctgctcatagtatagctagagcatcttt 4244441  T
Q  401 atctcatcttagc 413  Q
    |||||||| ||||    
T  4244442 atctcatcctagc 4244454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 14786012 - 14786086
Alignment:
Q  343 tgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagccccc 417  Q
    |||||||| ||||||||||||| ||| |  ||||||||||||| |||||||| ||| |||||||||||| |||||    
T  14786012 tgtcgtatgttaggaggcaagcaaatggtgttgctcatagtattgctagagcatcactatctcatcttaaccccc 14786086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 10748043 - 10748127
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagccc 415  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||| ||| |||||||| ||| ||||||| | ||||||    
T  10748043 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagccc 10748127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 3307707 - 3307797
Alignment:
Q  271 ctcacctcaatgaagttggagacattatttctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggaggcaa 362  Q
    |||||||||||||| ||| |||||| ||||||||||||||     ||||| |||||||  ||||||||| ||||| |||||||| |||||||    
T  3307707 ctcacctcaatgaatttg-agacataatttctcaatgtaggaacatcttgattacaaagtccgactttagagtgttgtatattacgaggcaa 3307797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 426
Target Start/End: Complemental strand, 1636 - 1541
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttta 426  Q
    ||||||||  |||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| |||||||||| ||||||    
T  1636 ccgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatattttta 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 488
Target Start/End: Complemental strand, 16484241 - 16484084
Alignment:
Q  332 cgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt-atagt 430  Q
    |||||||| |||||||| | ||| |||||||||||||| | ||||||||||||| |||||||| || |||||||| | ||| ||| || ||||| ||  |    
T  16484241 cgactttacagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatgat 16484142  T
Q  431 gtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 488  Q
    |||||||  ||| |||||||||| ||  | ||||||||||| |||||||| |||||||    
T  16484141 gtaccatctactatgtactctttatttctaaatgaaatgcactaattttgtctttgct 16484084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 34752777 - 34752689
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    ||||||||  |||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||| | ||||||||||    
T  34752777 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctcatagtattgctagagcatcactatctcaccctagcccccat 34752689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 11629493 - 11629581
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||||||| |||||||| ||||||||||| | ||| ||||||    
T  11629493 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctaggccccat 11629581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 9180818 - 9180730
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||| ||| |||||||| ||| ||||||| | ||||||||||    
T  9180818 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccat 9180730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 425
Target Start/End: Complemental strand, 5896390 - 5896306
Alignment:
Q  341 agtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    |||||||| | ||||||||||||  ||||   | ||||||||||| ||||||||| | |||||||||| |||||||||| |||||    
T  5896390 agtgtcgtttgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccccatattttt 5896306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 11072 - 10978
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccatcttttt 425  Q
    ||||||||  |||||||||| ||||||||||||| |||||  |||||| |||||| ||| |||||||  ||||||||| |||||||||| |||||    
T  11072 ccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccccatattttt 10978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 10159042 - 10158954
Alignment:
Q  331 ccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagcccccat 419  Q
    ||||||||  |||||||||| ||||||||||||| |||||  ||||||||| ||| |||||||| ||| ||||||| | ||||||||||    
T  10159042 ccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccat 10158954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 488
Target Start/End: Original strand, 16863221 - 16863391
Alignment:
Q  318 ttgtttacaaataccgactttaaagtgtcgtatattaggaggcaagctaataggattgctcatagtatagctagagcttcattatctcatcttagccccc 417  Q
    |||||||| ||| ||||||||  |||||||||| || |||||||||| |||||| | ||||| |  ||||||||||| || |  || ||   ||||||||    
T  16863221 ttgtttaccaattccgactttgtagtgtcgtatgttcggaggcaagcaaatagggtcgctcacaacatagctagagcatcctattcccaatctagccccc 16863320  T
Q  418 atctttt-tatagtgtaccattaactttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 488  Q
    || |||| |||| ||||||  | |||||||| |||||| |  ||||||||||||||||| ||| ||||||||    
T  16863321 atattttctataatgtaccgcttactttgtattctttgattatgaatgaaatgcattaacttt-cctttgct 16863391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 14453440 - 14453400
Alignment:
Q  379 atagtatagctagagcttcattatctcatcttagcccccat 419  Q
    |||||||||||||||| || |||||||||| ||||||||||    
T  14453440 atagtatagctagagcatccttatctcatcctagcccccat 14453400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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