View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_1 (Length: 1077)
Name: NF17894_low_1
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 270 - 630
Target Start/End: Original strand, 29385104 - 29385464
Alignment:
| Q |
270 |
tgtaattggagttacacttactccaacttctacatataatggagggcaagtagatatttccttatcgatctggagggtaacttctttaagctttacctct |
369 |
Q |
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| T |
29385104 |
tgtaattggagttacacttactccaacttctacatataatggagggcaagtagatattgccttatcgatctggagggtaacttctttaagctttacctct |
29385203 |
T |
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| Q |
370 |
ttcaaaattgtttttatttcccttcttttgttccttgtttattctattgagagttgtaatttaatttaggcaataataagagattacttgtgatacaagt |
469 |
Q |
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| T |
29385204 |
ttcaaaattatttttatttcccttcttttgttccttgtttattctattgagagttgtaatttaatttaggcaataataagagattacttgtgatacaagt |
29385303 |
T |
|
| Q |
470 |
aacaatagagaacgcagtgtataatagnnnnnnnaaagttatttagctttcaattttgttagttttggttgttaagcaatatagctctattttatcatgt |
569 |
Q |
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| T |
29385304 |
aacaatagagatcggagtgtacaacagttttttttaagttatttagctttcaattttgttagttttggttgttaagcaatgtagctctattttatcatgt |
29385403 |
T |
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| Q |
570 |
ataaaatactcaatgtgaaagtggaaatcacaactaagtaataactgaatattccacaata |
630 |
Q |
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| T |
29385404 |
ataaaatactcaatgtgaaagtggaaatcacaactaagtaataactgaatattccacaata |
29385464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 29382658 - 29382933
Alignment:
| Q |
1 |
attttcacctagtggtggatcaaattgcacttggagtggtttcacacagtcagcttgaatcgccttgaca----ggttcaggtacacgacttgtcctttg |
96 |
Q |
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| T |
29382658 |
attttcacctagtggtggatcaaattgcacttggagtggtttcacacagtcagcttgaatcgccttgacatataggttcaggtacacgacttgtcctttg |
29382757 |
T |
|
| Q |
97 |
ggatcatccaacatatgataggtctgcgagttgtacctactgcttctaagggtacttaatcactctctgaggaacatgaggttgatgttgaacgtgaggg |
196 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29382758 |
gtttcatccaacagatgataggtctgcgagttgtacctactgcttctaagggtacttaatcactctctgaggaacatgaggttgatgttgaacgtgaggg |
29382857 |
T |
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| Q |
197 |
tctgaactcaagaaaagaaagtgcatgctagctgaagttgttcgcgaagccgtgactcaggatggtgttatggtgt |
272 |
Q |
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| T |
29382858 |
tctgaactcaagaaaagaaagtgcatgctagctgaagttgttcacgaagccgtgactcaggatggtgttacggtgt |
29382933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 907 - 1030
Target Start/End: Original strand, 29385726 - 29385849
Alignment:
| Q |
907 |
caccctggcacctttattttcctctttttgtctagcaaacatatattgctcttcatatatgtctctctttgagtaacttaaaattgtcataaaacaaaaa |
1006 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29385726 |
caccctggcacctttattttcctctttttgtctagcaaacatatattgctcttcatatatgtctctctttgagtaacttaaaattgtcataaaacaaaaa |
29385825 |
T |
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| Q |
1007 |
ggtgaattggaggtttagtttgag |
1030 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
29385826 |
ggtgaattggaggtttagtttgag |
29385849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 720 - 793
Target Start/End: Original strand, 29385542 - 29385615
Alignment:
| Q |
720 |
tgaatcaagtgagtgaatgaaagtgcaaagtaaattgcactaattaacaatctctttctgatcactttataaac |
793 |
Q |
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| T |
29385542 |
tgaatcaagtgagtgaatgaaagtgcaaagtaaattgcactaattaacaatctctttctgatcactttataaac |
29385615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 270 - 375
Target Start/End: Original strand, 29366816 - 29366921
Alignment:
| Q |
270 |
tgtaattggagttacacttactccaacttctacatataatggagggcaagtagatatttccttatcgatctggagggtaacttctttaagctttacctct |
369 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| ||||| ||| ||| ||| ||||||||||||||||||||||| |||| |||||||||| |
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| T |
29366816 |
tgtaattggaggaacacttactccaacttcaacatatgatggaaatcaattaggcattcccttatcgatctggagggtaactcttttatactttacctct |
29366915 |
T |
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| Q |
370 |
ttcaaa |
375 |
Q |
| |
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|||||| |
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| T |
29366916 |
ttcaaa |
29366921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 29235772 - 29235845
Alignment:
| Q |
270 |
tgtaattggagttacacttactccaacttctacatataatggagggcaagtagatatttccttatcgatctgga |
343 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||| ||| | || ||| ||||| |||||||| |
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| T |
29235772 |
tgtaattggaggtacaattactccaacttctacatataatggaggacaatttgaaattaccttactgatctgga |
29235845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 706 - 762
Target Start/End: Original strand, 17853268 - 17853323
Alignment:
| Q |
706 |
caaagtgaatcaattgaatcaagtgagtgaatgaaagtgcaaagtaaattgcactaa |
762 |
Q |
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| T |
17853268 |
caaagtgaatcaattgtatcaagtgagtgaatgaaagtgcaaa-tgaattgcactaa |
17853323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 721 - 762
Target Start/End: Complemental strand, 42055799 - 42055758
Alignment:
| Q |
721 |
gaatcaagtgagtgaatgaaagtgcaaagtaaattgcactaa |
762 |
Q |
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| T |
42055799 |
gaatcaagtgagtgaatgaaagtgtaaagtgaattgcactaa |
42055758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 480
Target Start/End: Complemental strand, 16125091 - 16125033
Alignment:
| Q |
419 |
agagttgtaatttaatttaggcaataataagagattacttgtgatacaagtaacaatagaga |
480 |
Q |
| |
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|||||||||||| ||||||| |||||| | |||||||||||||| ||||||||||||||| |
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| T |
16125091 |
agagttgtaattcaatttagccaataaca---gattacttgtgatataagtaacaatagaga |
16125033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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